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Ldoc1 Gene Detail
Summary
  • Symbol
    Ldoc1
  • Name
    regulator of NFKB signaling
  • Synonyms
    LOC245441, Mar7, Mart7, Rtl7, Sirh7
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685212
    NCBI Gene: 434784
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:60753217-60754556 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 34.57 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    5 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685212
 protein coding gene ChrX:60753103-60754561 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035761
 protein coding gene ChrX:57119009-57120467 (+)
A/J MGP_AJ_G0035743
 protein coding gene ChrX:57332050-57333508 (+)
AKR/J MGP_AKRJ_G0035663
 protein coding gene ChrX:58870507-58871965 (+)
BALB/cJ MGP_BALBcJ_G0035730
 protein coding gene ChrX:56648413-56649871 (+)
C3H/HeJ MGP_C3HHeJ_G0035432
 protein coding gene ChrX:57671908-57673366 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036259
 protein coding gene ChrX:58675118-58676576 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033111
 protein coding gene ChrX:57042345-57043814 (+)
CAST/EiJ MGP_CASTEiJ_G0034725
 protein coding gene ChrX:43400014-43401473 (+)
CBA/J MGP_CBAJ_G0035407
 protein coding gene ChrX:60416020-60417478 (+)
DBA/2J MGP_DBA2J_G0035561
 protein coding gene ChrX:56877635-56879093 (+)
FVB/NJ MGP_FVBNJ_G0035511
 protein coding gene ChrX:56398155-56399613 (+)
LP/J MGP_LPJ_G0035649
 protein coding gene ChrX:57713354-57714812 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035547
 protein coding gene ChrX:62026257-62027715 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036275
 protein coding gene ChrX:57146942-57148400 (+)
PWK/PhJ MGP_PWKPhJ_G0034420
 protein coding gene ChrX:41551900-41553364 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034264
 protein coding gene ChrX:44287857-44289308 (+)
WSB/EiJ MGP_WSBEiJ_G0034868
 protein coding gene ChrX:56586581-56588039 (+)



Homology
more
  • Human Ortholog
    LDOC1, LDOC1 regulator of NFKB signaling
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LDOC1, LDOC1 regulator of NFKB signaling
  • Synonyms
    BCUR1, Mar7, Mart7, RTL7, SIRH7
  • Links
    NCBI Gene ID: 23641
    neXtProt AC: NX_O95751
    UniProt: O95751

  • Chr Location
    Xq27.1; chrX:141111605-141177129 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotypes from 1 allele in 1 genetic background
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele display delayed parturtion, placental abnormalities, and impaired ability to raise pups to weaning.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    736
  • Tissues
    19
  • cDNA Data
    19
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 434784 NCBI Gene Model | MGI Sequence Detail 1340 C57BL/6J ±  kb
    transcript NM_001018087 RefSeq | MGI Sequence Detail 1390 C57BL/6  
    polypeptide Q7TPY9 UniProt | EBI | MGI Sequence Detail 151 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 20
      cDNA 19
      Primer pair 1

      Microarray probesets 2
    References
    more
    • Summaries
      All 29
      Developmental Gene Expression 2
      Gene Ontology 4
      Phenotypes 4
    • Earliest
      J:96508 Brandt J, et al., Transposable elements as a source of genetic innovation: expression and evolution of a family of retrotransposon-derived neogenes in mammals. Gene. 2005 Jan 17;345(1):101-11
    • Latest
      J:220468 Walentin K, et al., A Grhl2-dependent gene network controls trophoblast branching morphogenesis. Development. 2015 Mar 15;142(6):1125-36
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory