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Zscan20 Gene Detail
Summary
  • Symbol
    Zscan20
  • Name
    zinc finger and SCAN domains 20
  • Synonyms
    MGC:30798, Zfp31
  • Feature Type
    protein coding gene
  • IDs
    MGI:2679268
    NCBI Gene: 269585
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr4:128477332-128503891 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 62.04 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    255 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2679268
 protein coding gene Chr4:128472142-128503933 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028803
 protein coding gene Chr4:130397951-130425711 (-)
A/J MGP_AJ_G0028762
 protein coding gene Chr4:125244744-125271216 (-)
AKR/J MGP_AKRJ_G0028715
 protein coding gene Chr4:128707624-128734158 (-)
BALB/cJ MGP_BALBcJ_G0028785
 protein coding gene Chr4:125825308-125852554 (-)
C3H/HeJ MGP_C3HHeJ_G0028499
 protein coding gene Chr4:128759167-128786882 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029227
 protein coding gene Chr4:135341610-135373568 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026500
 protein coding gene Chr4:118368221-118394862 (-)
CAST/EiJ MGP_CASTEiJ_G0027932
 protein coding gene Chr4:126927549-126958741 (-)
CBA/J MGP_CBAJ_G0028465
 protein coding gene Chr4:138631134-138658995 (-)
DBA/2J MGP_DBA2J_G0028614
 protein coding gene Chr4:125679309-125705865 (-)
FVB/NJ MGP_FVBNJ_G0028581
 protein coding gene Chr4:124423575-124450916 (-)
LP/J MGP_LPJ_G0028715
 protein coding gene Chr4:130711091-130737657 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028607
 protein coding gene Chr4:143575307-143602918 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029265
 protein coding gene Chr4:129078983-129108196 (-)
PWK/PhJ MGP_PWKPhJ_G0027653
 protein coding gene Chr4:122221128-122265303 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027480
 protein coding gene Chr4:124928855-124955520 (-)
WSB/EiJ MGP_WSBEiJ_G0028012
 protein coding gene Chr4:129182138-129209190 (-)



Homology
more
  • Human Ortholog
    ZSCAN20, zinc finger and SCAN domain containing 20
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZSCAN20, zinc finger and SCAN domain containing 20
  • Synonyms
    KOX29, ZFP-31, ZNF31, ZNF360
  • Links
    NCBI Gene ID: 7579
    neXtProt AC: NX_P17040
    UniProt: P17040

  • Chr Location
    1p35.1; chr1:33472645-33501643 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    761
  • Tissues
    44
  • cDNA Data
    25
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000061894 Ensembl Gene Model | MGI Sequence Detail 26560 C57BL/6J ±  kb
transcript ENSMUST00000097877 Ensembl | MGI Sequence Detail 5364 Not Applicable  
polypeptide ENSMUSP00000095487 Ensembl | MGI Sequence Detail 1030 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 26
    cDNA 25
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 33
    Developmental Gene Expression 4
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory