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Smg5 Gene Detail
Summary
  • Symbol
    Smg5
  • Name
    SMG5 nonsense mediated mRNA decay factor
  • Synonyms
    MGC:30464, MGC:56792, mKIAA1089, Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
  • Feature Type
    protein coding gene
  • IDs
    MGI:2447364
    NCBI Gene: 229512
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:88243567-88269645 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 38.80 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    45 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2447364
 protein coding gene Chr3:88242050-88269645 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027391
 protein coding gene Chr3:88488879-88517403 (+)
A/J MGP_AJ_G0027355
 protein coding gene Chr3:85493071-85519129 (+)
AKR/J MGP_AKRJ_G0027321
 protein coding gene Chr3:87595765-87623733 (+)
BALB/cJ MGP_BALBcJ_G0027364
 protein coding gene Chr3:85582532-85609397 (+)
C3H/HeJ MGP_C3HHeJ_G0027107
 protein coding gene Chr3:87873994-87899871 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027810
 protein coding gene Chr3:91746548-91776444 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025163
 protein coding gene Chr3:81111250-81138942 (+)
CAST/EiJ MGP_CASTEiJ_G0026553
 protein coding gene Chr3:88084936-88115668 (+)
CBA/J MGP_CBAJ_G0027082
 protein coding gene Chr3:94872177-94898164 (+)
DBA/2J MGP_DBA2J_G0027218
 protein coding gene Chr3:84981772-85008437 (+)
FVB/NJ MGP_FVBNJ_G0027187
 protein coding gene Chr3:83251321-83279092 (+)
LP/J MGP_LPJ_G0027326
 protein coding gene Chr3:89482734-89511917 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027206
 protein coding gene Chr3:101101786-101134417 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027868
 protein coding gene Chr3:87350700-87379733 (+)
PWK/PhJ MGP_PWKPhJ_G0026286
 protein coding gene Chr3:84779440-84807355 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026104
 protein coding gene Chr3:86540883-86570148 (+)
WSB/EiJ MGP_WSBEiJ_G0026633
 protein coding gene Chr3:87705602-87732372 (+)



Homology
more
  • Human Ortholog
    SMG5, SMG5 nonsense mediated mRNA decay factor
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMG5, SMG5 nonsense mediated mRNA decay factor
  • Synonyms
    EST1B, LPTSRP1, LPTS-RP1, SMG-5
  • Links
    NCBI Gene ID: 23381
    neXtProt AC: NX_Q9UPR3
    UniProt: Q9UPR3

  • Chr Location
    1q22; chr1:156249224-156291516 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    143
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000001415 Ensembl Gene Model | MGI Sequence Detail 26079 C57BL/6J ±  kb
    transcript ENSMUST00000001451 Ensembl | MGI Sequence Detail 4448 Not Applicable  
    polypeptide ENSMUSP00000001451 Ensembl | MGI Sequence Detail 1017 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 143
      cDNA 143

      Microarray probesets 5
    References
    more
    • Summaries
      All 39
      Diseases 1
      Gene Ontology 4
      Phenotypes 13
    • Earliest
      J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
    • Latest
      J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory