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Trmt9b Gene Detail
Summary
  • Symbol
    Trmt9b
  • Name
    tRNA methyltransferase 9B
  • Synonyms
    6430573F11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442328
    NCBI Gene: 319582
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:36924643-36981738 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 23.05 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    791 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442328
 protein coding gene Chr8:36924643-36983724 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033544
 protein coding gene Chr8:35117804-35179793 (+)
A/J MGP_AJ_G0033524
 protein coding gene Chr8:33750475-33807249 (+)
AKR/J MGP_AKRJ_G0033448
 protein coding gene Chr8:34776566-34837982 (+)
BALB/cJ MGP_BALBcJ_G0033520
 protein coding gene Chr8:33840885-33897650 (+)
C3H/HeJ MGP_C3HHeJ_G0033232
 protein coding gene Chr8:35124512-35190378 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034036
 protein coding gene Chr8:36427619-36485128 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030985
 protein coding gene Chr8:30658489-30714235 (+)
CAST/EiJ MGP_CASTEiJ_G0032559
 protein coding gene Chr8:34603334-34667120 (+)
CBA/J MGP_CBAJ_G0033210
 protein coding gene Chr8:37859521-37924485 (+)
DBA/2J MGP_DBA2J_G0033363
 protein coding gene Chr8:33655060-33713168 (+)
FVB/NJ MGP_FVBNJ_G0033308
 protein coding gene Chr8:33312184-33367054 (+)
LP/J MGP_LPJ_G0033453
 protein coding gene Chr8:35083054-35148175 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033350
 protein coding gene Chr8:37256623-37319604 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034055
 protein coding gene Chr8:34920978-34982334 (+)
PWK/PhJ MGP_PWKPhJ_G0032269
 protein coding gene Chr8:33220007-33275083 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032101
 protein coding gene Chr8:34160023-34218154 (+)
WSB/EiJ MGP_WSBEiJ_G0032675
 protein coding gene Chr8:35106326-35172536 (+)



Homology
more
  • Human Ortholog
    TRMT9B, tRNA methyltransferase 9B (putative)
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRMT9B, tRNA methyltransferase 9B (putative)
  • Synonyms
    C8orf79, hTRM9L, KIAA1456, TRM9L
  • Links
    NCBI Gene ID: 57604
    neXtProt AC: NX_Q9P272
    UniProt: Q9P272

  • Chr Location
    8p22; chr8:12945642-13031503 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    755
  • Tissues
    35
  • cDNA Data
    16
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 319582 NCBI Gene Model | MGI Sequence Detail 57096 C57BL/6J ±  kb
    transcript NM_001384099 RefSeq | MGI Sequence Detail 4113 C57BL/6  
    polypeptide Q80WQ4 UniProt | EBI | MGI Sequence Detail 447 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 16
      cDNA 16

      Microarray probesets 3
    References
    more
    • Summaries
      All 27
      Developmental Gene Expression 2
      Gene Ontology 3
      Phenotypes 7
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:264712 Codner GF, et al., Application of long single-stranded DNA donors in genome editing: generation and validation of mouse mutants. BMC Biol. 2018 Jun 21;16(1):70
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory