Snord87 MGI Mouse Gene Detail - MGI:2387894 - small nucleolar RNA, C/D box 87

Sequence Map

Chr1:10012695-10012768 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2387894	snoRNA gene	Chr1:10012688-10012774 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038374	snoRNA gene	Chr1:7206183-7206269 (-)
A/J	MGP_AJ_G0038365	snoRNA gene	Chr1:7263239-7263325 (-)
AKR/J	MGP_AKRJ_G0038302	snoRNA gene	Chr1:7151026-7151112 (-)
BALB/cJ	MGP_BALBcJ_G0038351	snoRNA gene	Chr1:6996728-6996814 (-)
C3H/HeJ	MGP_C3HHeJ_G0038014	snoRNA gene	Chr1:7071979-7072065 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0038889	snoRNA gene	Chr1:7543888-7543974 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035678	snoRNA gene	Chr1:6100313-6100399 (-)
CAST/EiJ	MGP_CASTEiJ_G0037160	snoRNA gene	Chr1:7266043-7266129 (-)
CBA/J	MGP_CBAJ_G0037986	snoRNA gene	Chr1:7702450-7702536 (-)
DBA/2J	MGP_DBA2J_G0038177	snoRNA gene	Chr1:6879979-6880065 (-)
FVB/NJ	MGP_FVBNJ_G0038127	snoRNA gene	Chr1:6796476-6796562 (-)
LP/J	MGP_LPJ_G0038216	snoRNA gene	Chr1:7421705-7421791 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038126	snoRNA gene	Chr1:8362775-8362861 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038998	snoRNA gene	Chr1:7052292-7052378 (-)
PWK/PhJ	MGP_PWKPhJ_G0036850	snoRNA gene	Chr1:6747887-6747973 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0036606	snoRNA gene	Chr1:7219918-7220002 (-)
WSB/EiJ	MGP_WSBEiJ_G0037390	snoRNA gene	Chr1:7082636-7082722 (-)

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Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	266793	NCBI Gene Model \| MGI Sequence Detail	74	C57BL/6J	± kb
	transcript	NR_004410	RefSeq \| MGI Sequence Detail	74	Not Specified

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Summaries

All 8

Gene Ontology 1
Earliest

J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
Latest

J:78020 Gogolevskaya IK, et al., U87 RNA, a novel C/D box small nucleolar RNA from mammalian cells. Gene. 2002 Jun 12;292(1-2):199-204

TSS for Snord87:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10946	Chr1:10012762-10012775 (-)	-1 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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