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Slc35c2 Gene Detail
Summary
  • Symbol
    Slc35c2
  • Name
    solute carrier family 35, member C2
  • Synonyms
    CGI-15, D2Wsu58e, MGC:18664, Ovcov1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385166
    NCBI Gene: 228875
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:165118474-165129789 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 85.53 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    109 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2385166
 protein coding gene Chr2:165118442-165129808 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026889
 protein coding gene Chr2:170826068-170838518 (-)
A/J MGP_AJ_G0026856
 protein coding gene Chr2:163824455-163838120 (-)
AKR/J MGP_AKRJ_G0026827
 protein coding gene Chr2:168706383-168717706 (-)
BALB/cJ MGP_BALBcJ_G0026865
 protein coding gene Chr2:164190376-164202209 (-)
C3H/HeJ MGP_C3HHeJ_G0026607
 protein coding gene Chr2:169064960-169076983 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027312
 protein coding gene Chr2:175769638-175780791 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024683
 protein coding gene Chr2:157226751-157238059 (-)
CAST/EiJ MGP_CASTEiJ_G0026065
 protein coding gene Chr2:169490664-169503850 (-)
CBA/J MGP_CBAJ_G0026584
 protein coding gene Chr2:182166332-182177656 (-)
DBA/2J MGP_DBA2J_G0026722
 protein coding gene Chr2:162985233-162996532 (-)
FVB/NJ MGP_FVBNJ_G0026688
 protein coding gene Chr2:161427784-161439051 (-)
LP/J MGP_LPJ_G0026824
 protein coding gene Chr2:170877382-170888666 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026707
 protein coding gene Chr2:185677958-185689229 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027369
 protein coding gene Chr2:168603785-168615109 (-)
PWK/PhJ MGP_PWKPhJ_G0025802
 protein coding gene Chr2:162594843-162606400 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025603
 protein coding gene Chr2:167519553-167530719 (-)
WSB/EiJ MGP_WSBEiJ_G0026138
 protein coding gene Chr2:169500318-169511625 (-)



Homology
more
  • Human Ortholog
    SLC35C2, solute carrier family 35 member C2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC35C2, solute carrier family 35 member C2
  • Synonyms
    BA394O2.1, C20orf5, CGI-15, OVCOV1
  • Links
    NCBI Gene ID: 51006
    neXtProt AC: NX_Q9NQQ7
    UniProt: Q9NQQ7

  • Chr Location
    20q13.12; chr20:46345980-46364458 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    18
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    877
  • Tissues
    145
  • cDNA Data
    14
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000017664 Ensembl Gene Model | MGI Sequence Detail 11316 C57BL/6J ±  kb
    transcript ENSMUST00000109300 Ensembl | MGI Sequence Detail 2008 Not Applicable  
    polypeptide ENSMUSP00000104923 Ensembl | MGI Sequence Detail 364 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 16
      cDNA 14
      Primer pair 2

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGD-MRK-34239, MGI:106545, MGI:2139522
    References
    more
    • Summaries
      All 40
      Developmental Gene Expression 6
      Gene Ontology 5
      Phenotypes 8
    • Earliest
      J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
    • Latest
      J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory