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Atpaf1 Gene Detail
Summary
  • Symbol
    Atpaf1
  • Name
    ATP synthase mitochondrial F1 complex assembly factor 1
  • Synonyms
    6330547J17Rik, ATP11, ATP11p
  • Feature Type
    protein coding gene
  • IDs
    MGI:2180560
    NCBI Gene: 230649
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:115642025-115669120 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 4, 53.06 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    138 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2180560
protein coding gene Chr4:115642009-115679852 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028608
protein coding gene Chr4:116626750-116657005 (+)
A/J MGP_AJ_G0028569
protein coding gene Chr4:112175377-112209002 (+)
AKR/J MGP_AKRJ_G0028518
protein coding gene Chr4:114585260-114615239 (+)
BALB/cJ MGP_BALBcJ_G0028590
protein coding gene Chr4:112807214-112836522 (+)
C3H/HeJ MGP_C3HHeJ_G0028304
protein coding gene Chr4:116158580-116193459 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029031
protein coding gene Chr4:121153891-121180019 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026315
protein coding gene Chr4:106225559-106255134 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0028271
protein coding gene Chr4:124443658-124478272 (+)
DBA/2J MGP_DBA2J_G0028419
protein coding gene Chr4:112823612-112858289 (+)
FVB/NJ MGP_FVBNJ_G0028387
protein coding gene Chr4:111310195-111343393 (+)
LP/J MGP_LPJ_G0028521
protein coding gene Chr4:116852067-116875789 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028414
protein coding gene Chr4:129462665-129496611 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029068
protein coding gene Chr4:115734024-115772745 (+)
PWK/PhJ MGP_PWKPhJ_G0027464
protein coding gene Chr4:109582255-109617184 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027287
protein coding gene Chr4:111983474-112014821 (+)
WSB/EiJ MGP_WSBEiJ_G0027817
protein coding gene Chr4:115600872-115635250 (+)



Homology
more
  • Human Ortholog
    ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1
  • Synonyms
    ATP11, ATP11p
  • Links
    NCBI Gene ID: 64756
    neXtProt AC: NX_Q5TC12
    UniProt: Q5TC12

  • Chr Location
    1p33; chr1:46632737-46673867 (-)  GRCh38

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 230649 NCBI Gene Model | MGI Sequence Detail 27096 C57BL/6J ±  kb
transcript NM_181040 RefSeq | MGI Sequence Detail 1925 C57BL/6  
polypeptide Q811I0 UniProt | EBI | MGI Sequence Detail 324 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 5
Other
Accession IDs
less
MGI:2138294
References
more
  • Summaries
    All 37
    Gene Ontology 3
    Phenotypes 11
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/19/2024
MGI 6.23
The Jackson Laboratory