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Slc35f1 Gene Detail
Summary
  • Symbol
    Slc35f1
  • Name
    solute carrier family 35, member F1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2139810
    NCBI Gene: 215085
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:52566629-52987718 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 26.79 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2266 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2139810
 protein coding gene Chr10:52566597-52987718 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017227
 protein coding gene Chr10:51834602-52278451 (+)
A/J MGP_AJ_G0017203
 protein coding gene Chr10:50319523-50741775 (+)
AKR/J MGP_AKRJ_G0017162
 protein coding gene Chr10:51294510-51735249 (+)
BALB/cJ MGP_BALBcJ_G0017164
 protein coding gene Chr10:50426735-50872034 (+)
C3H/HeJ MGP_C3HHeJ_G0016986
 protein coding gene Chr10:51558688-51996510 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017623
 protein coding gene Chr10:53476981-53918671 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015317
 protein coding gene Chr10:47496813-47912333 (+)
CAST/EiJ MGP_CASTEiJ_G0016560
 protein coding gene Chr10:51623290-52070595 (+)
CBA/J MGP_CBAJ_G0016959
 protein coding gene Chr10:55751354-56217638 (+)
DBA/2J MGP_DBA2J_G0017064
 protein coding gene Chr10:49743113-50181730 (+)
FVB/NJ MGP_FVBNJ_G0017058
 protein coding gene Chr10:49071990-49485231 (+)
LP/J MGP_LPJ_G0017139
 protein coding gene Chr10:51915883-52348711 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017087
 protein coding gene Chr10:57701076-58171660 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017658
 protein coding gene Chr10:51197578-51645479 (+)
PWK/PhJ MGP_PWKPhJ_G0016341
 protein coding gene Chr10:49583029-50011659 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016126
 protein coding gene Chr10:50807135-51257828 (+)
WSB/EiJ MGP_WSBEiJ_G0016625
 protein coding gene Chr10:51449302-51890668 (+)



Homology
more
  • Human Ortholog
    SLC35F1, solute carrier family 35 member F1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC35F1, solute carrier family 35 member F1
  • Synonyms
    C6orf169, dJ230I3.1
  • Links
    NCBI Gene ID: 222553
    neXtProt AC: NX_Q5T1Q4
    UniProt: Q5T1Q4

  • Chr Location
    6q22.2-q22.31; chr6:117907264-118317676 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 2 genetic backgrounds
    14 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit no detectable phenotypic abnormalities.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    856
  • Tissues
    28
  • cDNA Data
    32
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038602 Ensembl Gene Model | MGI Sequence Detail 421090 C57BL/6J ±  kb
transcript ENSMUST00000105473 Ensembl | MGI Sequence Detail 4941 Not Applicable  
polypeptide ENSMUSP00000101113 Ensembl | MGI Sequence Detail 408 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 33
    cDNA 32
    Primer pair 1

    Microarray probesets 4
References
more
  • Summaries
    All 37
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 14
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:337057 Ehlers JS, et al., Morphological and behavioral analysis of Slc35f1-deficient mice revealed no neurodevelopmental phenotype. Brain Struct Funct. 2023 May;228(3-4):895-906
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory