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Vsig2 Gene Detail
Summary
  • Symbol
    Vsig2
  • Name
    V-set and immunoglobulin domain containing 2
  • Synonyms
    1190004B15Rik, 2210413P10Rik, CTM, CTX
  • Feature Type
    protein coding gene
  • IDs
    MGI:1928009
    NCBI Gene: 57276
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:37450551-37455501 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 20.78 cM, cytoband B
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    57 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1928009
 protein coding gene Chr9:37450551-37455501 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034567
 protein coding gene Chr9:35538091-35543023 (+)
A/J MGP_AJ_G0034546
 protein coding gene Chr9:34583722-34588773 (+)
AKR/J MGP_AKRJ_G0034473
 protein coding gene Chr9:35342230-35347180 (+)
BALB/cJ MGP_BALBcJ_G0034537
 protein coding gene Chr9:34421478-34426408 (+)
C3H/HeJ MGP_C3HHeJ_G0034250
 protein coding gene Chr9:35775261-35780191 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035059
 protein coding gene Chr9:36673932-36678874 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031985
 protein coding gene Chr9:33687508-33692430 (+)
CAST/EiJ MGP_CASTEiJ_G0033571
 protein coding gene Chr9:35470195-35475106 (+)
CBA/J MGP_CBAJ_G0034223
 protein coding gene Chr9:37936658-37941576 (+)
DBA/2J MGP_DBA2J_G0034381
 protein coding gene Chr9:34631158-34636149 (+)
FVB/NJ MGP_FVBNJ_G0034322
 protein coding gene Chr9:33883158-33888098 (+)
LP/J MGP_LPJ_G0034466
 protein coding gene Chr9:35714663-35719467 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034368
 protein coding gene Chr9:39534829-39539767 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035078
 protein coding gene Chr9:35281065-35285991 (+)
PWK/PhJ MGP_PWKPhJ_G0033277
 protein coding gene Chr9:34527222-34532211 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033111
 protein coding gene Chr9:35477531-35482484 (+)
WSB/EiJ MGP_WSBEiJ_G0033687
 protein coding gene Chr9:35098344-35103278 (+)



Homology
more
  • Human Ortholog
    VSIG2, V-set and immunoglobulin domain containing 2
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    VSIG2, V-set and immunoglobulin domain containing 2
  • Synonyms
    2210413P10Rik, CTH, CTXL
  • Links
    NCBI Gene ID: 23584
    neXtProt AC: NX_Q96IQ7
    UniProt: Q96IQ7

  • Chr Location
    11q24.2; chr11:124747474-124752255 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    8
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 57276 NCBI Gene Model | MGI Sequence Detail 4951 C57BL/6J ±  kb
transcript NM_020518 RefSeq | MGI Sequence Detail 1170 C57BL/6  
polypeptide Q9Z109 UniProt | EBI | MGI Sequence Detail 328 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 8
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1916153, MGI:1919617, MGI:2143229
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:64925 Chretien I, et al., CTX, a Xenopus thymocyte receptor, defines a molecular family conserved throughout vertebrates. Eur J Immunol. 1998 Dec;28(12):4094-104
  • Latest
    J:229257 Gu Z, et al., Expression of the immunoglobulin superfamily cell adhesion molecules in the developing spinal cord and dorsal root ganglion. PLoS One. 2015;10(3):e0121550
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory