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Krba1 Gene Detail
Summary
  • Symbol
    Krba1
  • Name
    KRAB-A domain containing 1
  • Synonyms
    A930040G15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925077
    NCBI Gene: 77827
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:48372520-48396715 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 23.36 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    202 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925077
 protein coding gene Chr6:48371577-48396789 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030692
 protein coding gene Chr6:47331252-47355447 (+)
A/J MGP_AJ_G0030663
 protein coding gene Chr6:45184904-45210382 (+)
AKR/J MGP_AKRJ_G0030588
 protein coding gene Chr6:46779009-46804234 (+)
BALB/cJ MGP_BALBcJ_G0030673
 protein coding gene Chr6:45521083-45545442 (+)
C3H/HeJ MGP_C3HHeJ_G0030386
 protein coding gene Chr6:46780230-46804952 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031128
 protein coding gene Chr6:48455156-48479351 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028334
 protein coding gene Chr6:42821571-42845573 (+)
CAST/EiJ MGP_CASTEiJ_G0029790
 protein coding gene Chr6:46502082-46526047 (+)
CBA/J MGP_CBAJ_G0030361
 protein coding gene Chr6:50464329-50490945 (+)
DBA/2J MGP_DBA2J_G0030510
 protein coding gene Chr6:45105482-45129809 (+)
FVB/NJ MGP_FVBNJ_G0030462
 protein coding gene Chr6:44733678-44758250 (+)
LP/J MGP_LPJ_G0030595
 protein coding gene Chr6:47307777-47331972 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030496
 protein coding gene Chr6:53283816-53308116 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031157
 protein coding gene Chr6:46634084-46658279 (+)
PWK/PhJ MGP_PWKPhJ_G0029502
 protein coding gene Chr6:44633770-44657698 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029338
 protein coding gene Chr6:45991636-46015647 (+)
WSB/EiJ MGP_WSBEiJ_G0029867
 protein coding gene Chr6:46636856-46660773 (+)



Homology
more
  • Human Ortholog
    KRBA1, KRAB-A domain containing 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    KRBA1, KRAB-A domain containing 1
  • Links
    NCBI Gene ID: 84626
    neXtProt AC: NX_A5PL33
    UniProt: A5PL33

  • Chr Location
    7q36.1; chr7:149714781-149734575 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    758
  • Tissues
    52
  • cDNA Data
    12
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000042810 Ensembl Gene Model | MGI Sequence Detail 24196 C57BL/6J ±  kb
transcript ENSMUST00000114572 Ensembl | MGI Sequence Detail 4323 Not Applicable  
polypeptide ENSMUSP00000110219 Ensembl | MGI Sequence Detail 1078 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 12
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2141410
References
more
  • Summaries
    All 31
    Developmental Gene Expression 3
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory