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Ccdc9 Gene Detail
Summary
  • Symbol
    Ccdc9
  • Name
    coiled-coil domain containing 9
  • Synonyms
    2600011L02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921443
    NCBI Gene: 243846
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:16007967-16020720 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 8.78 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    133 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921443
 protein coding gene Chr7:16005938-16020720 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031706
 protein coding gene Chr7:13949873-13962633 (-)
A/J MGP_AJ_G0031678
 protein coding gene Chr7:13741598-13754366 (-)
AKR/J MGP_AKRJ_G0031603
 protein coding gene Chr7:14048933-14063266 (-)
BALB/cJ MGP_BALBcJ_G0031684
 protein coding gene Chr7:13834369-13852873 (-)
C3H/HeJ MGP_C3HHeJ_G0031407
 protein coding gene Chr7:14224725-14238194 (-)
C57BL/6NJ MGP_C57BL6NJ_G0032151
 protein coding gene Chr7:14696997-14711268 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029230
 protein coding gene Chr7:15297027-15309660 (-)
CAST/EiJ MGP_CASTEiJ_G0030757
 protein coding gene Chr7:10996175-11016904 (-)
CBA/J MGP_CBAJ_G0031366
 protein coding gene Chr7:15172363-15185048 (-)
DBA/2J MGP_DBA2J_G0031522
 protein coding gene Chr7:13626494-13639646 (-)
FVB/NJ MGP_FVBNJ_G0031478
 protein coding gene Chr7:13519037-13534177 (-)
LP/J MGP_LPJ_G0031607
 protein coding gene Chr7:14215503-14228224 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031513
 protein coding gene Chr7:15137507-15151557 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0032180
 protein coding gene Chr7:13829341-13842972 (-)
PWK/PhJ MGP_PWKPhJ_G0030481
 protein coding gene Chr7:11138167-11153503 (-)
SPRET/EiJ MGP_SPRETEiJ_G0030309
 protein coding gene Chr7:8753227-8765744 (-)
WSB/EiJ MGP_WSBEiJ_G0030854
 protein coding gene Chr7:13879335-13895209 (-)



Homology
more
  • Human Ortholog
    CCDC9, coiled-coil domain containing 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC9, coiled-coil domain containing 9
  • Links
    NCBI Gene ID: 26093
    neXtProt AC: NX_Q9Y3X0
    UniProt: Q9Y3X0

  • Chr Location
    19q13.32; chr19:47255980-47275723 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    35
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041375 Ensembl Gene Model | MGI Sequence Detail 12754 C57BL/6J ±  kb
transcript ENSMUST00000118976 Ensembl | MGI Sequence Detail 2175 Not Applicable  
polypeptide ENSMUSP00000114088 Ensembl | MGI Sequence Detail 588 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 35
    cDNA 35

    Microarray probesets 3
References
more
  • Summaries
    All 23
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory