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Thoc3 Gene Detail
Summary
  • Symbol
    Thoc3
  • Name
    THO complex 3
  • Synonyms
    2410044K02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920916
    NCBI Gene: 73666
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:54606650-54616653 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 28.69 cM, cytoband B2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    44 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920916
 protein coding gene Chr13:54606650-54616662 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020568
 protein coding gene Chr13:53859206-53869219 (-)
A/J MGP_AJ_G0020522
 protein coding gene Chr13:51885570-51895574 (-)
AKR/J MGP_AKRJ_G0020500
 protein coding gene Chr13:53408849-53418856 (-)
BALB/cJ MGP_BALBcJ_G0020518
 protein coding gene Chr13:52109726-52120153 (-)
C3H/HeJ MGP_C3HHeJ_G0020317
 protein coding gene Chr13:53232866-53242917 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020952
 protein coding gene Chr13:55504848-55514853 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018534
 protein coding gene Chr13:49878483-49888662 (-)
CAST/EiJ MGP_CASTEiJ_G0019831
 protein coding gene Chr13:53302020-53312036 (-)
CBA/J MGP_CBAJ_G0020277
 protein coding gene Chr13:57611545-57621544 (-)
DBA/2J MGP_DBA2J_G0020400
 protein coding gene Chr13:51451878-51461882 (-)
FVB/NJ MGP_FVBNJ_G0020379
 protein coding gene Chr13:50902262-50913063 (-)
LP/J MGP_LPJ_G0020476
 protein coding gene Chr13:54129037-54139042 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020408
 protein coding gene Chr13:57103152-57113169 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020995
 protein coding gene Chr13:52997336-53007342 (-)
PWK/PhJ MGP_PWKPhJ_G0019587
 protein coding gene Chr13:51429090-51439353 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019414
 protein coding gene Chr13:51896647-51906585 (-)
WSB/EiJ MGP_WSBEiJ_G0019893
 protein coding gene Chr13:53331909-53341914 (-)



Homology
more
  • Human Ortholog
    THOC3, THO complex subunit 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    THOC3, THO complex subunit 3
  • Synonyms
    hTREX45, THO3
  • Links
    NCBI Gene ID: 84321
    neXtProt AC: NX_Q96J01
    UniProt: Q96J01

  • Chr Location
    5q35.2; chr5:175917873-176034680 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Gene trapped
    1
  • Genomic Mutations
    1 involving Thoc3
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
    19 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    77
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 73666 NCBI Gene Model | MGI Sequence Detail 10004 C57BL/6J ±  kb
transcript NM_028597 RefSeq | MGI Sequence Detail 2326 C57BL/6  
polypeptide Q8VE80 UniProt | EBI | MGI Sequence Detail 351 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 77
    cDNA 77

    Microarray probesets 5
Other
Accession IDs
less
MGI:2145327
References
more
  • Summaries
    All 35
    Developmental Gene Expression 1
    Gene Ontology 7
    Phenotypes 7
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:345229 Bhattacharjee R, et al., Compromised transcription-mRNA export factor THOC2 causes R-loop accumulation, DNA damage and adverse neurodevelopment. Nat Commun. 2024 Feb 8;15(1):1210
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory