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Nipsnap3a Gene Detail
Summary
  • Symbol
    Nipsnap3a
  • Name
    nipsnap homolog 3A
  • Synonyms
    1700054F22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920648
    NCBI Gene: 73398
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:52989284-53000854 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 28.57 cM, cytoband B3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    117 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920648
 protein coding gene Chr4:52989272-53001162 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028296
 protein coding gene Chr4:51599524-51613658 (+)
A/J MGP_AJ_G0028257
 protein coding gene Chr4:49625519-49636744 (+)
AKR/J MGP_AKRJ_G0028206
 protein coding gene Chr4:50984075-50995492 (+)
BALB/cJ MGP_BALBcJ_G0028276
 protein coding gene Chr4:49803126-49814405 (+)
C3H/HeJ MGP_C3HHeJ_G0027997
 protein coding gene Chr4:51533659-51546250 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028717
 protein coding gene Chr4:53515102-53530832 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026025
 protein coding gene Chr4:46601319-46612003 (+)
CAST/EiJ MGP_CASTEiJ_G0027435
 protein coding gene Chr4:51172261-51188821 (+)
CBA/J MGP_CBAJ_G0027962
 protein coding gene Chr4:55332320-55343480 (+)
DBA/2J MGP_DBA2J_G0028112
 protein coding gene Chr4:49599489-49611129 (+)
FVB/NJ MGP_FVBNJ_G0028079
 protein coding gene Chr4:48829868-48841974 (+)
LP/J MGP_LPJ_G0028211
 protein coding gene Chr4:51708337-51721425 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028103
 protein coding gene Chr4:58569653-58586731 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028753
 protein coding gene Chr4:51217183-51230908 (+)
PWK/PhJ MGP_PWKPhJ_G0027160
 protein coding gene Chr4:49556323-49568620 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026988
 protein coding gene Chr4:50510177-50522739 (+)
WSB/EiJ MGP_WSBEiJ_G0027513
 protein coding gene Chr4:51107388-51118550 (+)



Homology
more
  • Human Ortholog
    NIPSNAP3A, nipsnap homolog 3A
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NIPSNAP3A, nipsnap homolog 3A
  • Synonyms
    HSPC299, NIPSNAP4, TASSC
  • Links
    NCBI Gene ID: 25934
    neXtProt AC: NX_Q9UFN0
    UniProt: Q9UFN0

  • Chr Location
    9q31.1; chr9:104747683-104760120 (+)  GRCh38
  • Human Ortholog
    NIPSNAP3B, nipsnap homolog 3B
  • Synonyms
    FP944, NIPSNAP3, SNAP1
  • Links
    NCBI Gene ID: 55335
    neXtProt AC: NX_Q9BS92
    UniProt: Q9BS92

  • Chr Location
    9q31.1; chr9:104764129-104790899 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 73398 NCBI Gene Model | MGI Sequence Detail 11571 C57BL/6J ±  kb
transcript NM_028529 RefSeq | MGI Sequence Detail 1099 C57BL/6  
polypeptide NP_082805 RefSeq | MGI Sequence Detail 245 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 3
Other
Accession IDs
less
MGI:2140274
References
more
  • Summaries
    All 29
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:274872 Ingham NJ, et al., Mouse screen reveals multiple new genes underlying mouse and human hearing loss. PLoS Biol. 2019 Apr;17(4):e3000194
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory