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Col20a1 Gene Detail
Summary
  • Symbol
    Col20a1
  • Name
    collagen, type XX, alpha 1
  • Synonyms
    1700051I12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920618
    NCBI Gene: 73368
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:180628328-180660156 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 103.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    342 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920618
 protein coding gene Chr2:180626629-180660156 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027008
 protein coding gene Chr2:187554811-187587566 (+)
A/J MGP_AJ_G0026974
 protein coding gene Chr2:179839546-179871173 (+)
AKR/J MGP_AKRJ_G0026944
 protein coding gene Chr2:185230061-185262367 (+)
BALB/cJ MGP_BALBcJ_G0026983
 protein coding gene Chr2:180301311-180332234 (+)
C3H/HeJ MGP_C3HHeJ_G0026724
 protein coding gene Chr2:185589009-185619930 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027429
 protein coding gene Chr2:192980631-193011622 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024794
 protein coding gene Chr2:170525734-170556188 (+)
CAST/EiJ MGP_CASTEiJ_G0026183
 protein coding gene Chr2:183837401-183868459 (+)
CBA/J MGP_CBAJ_G0026701
 protein coding gene Chr2:199974065-200008463 (+)
DBA/2J MGP_DBA2J_G0026839
 protein coding gene Chr2:178932621-178963485 (+)
FVB/NJ MGP_FVBNJ_G0026805
 protein coding gene Chr2:177546273-177580399 (+)
LP/J MGP_LPJ_G0026940
 protein coding gene Chr2:187569736-187601863 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026824
 protein coding gene Chr2:202548973-202580826 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027488
 protein coding gene Chr2:185203385-185237227 (+)
PWK/PhJ MGP_PWKPhJ_G0025919
 protein coding gene Chr2:176458119-176491914 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025719
 protein coding gene Chr2:181688305-181719148 (+)
WSB/EiJ MGP_WSBEiJ_G0026255
 protein coding gene Chr2:186188520-186223260 (+)



Homology
more
  • Human Ortholog
    COL20A1, collagen type XX alpha 1 chain
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    COL20A1, collagen type XX alpha 1 chain
  • Links
    NCBI Gene ID: 57642
    neXtProt AC: NX_Q9P218
    UniProt: Q9P218

  • Chr Location
    20q13.33; chr20:63293186-63334851 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    9 phenotype references
Male mice homozygous for a mutation are viable and show normal fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    837
  • Tissues
    42
  • cDNA Data
    5
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000016356 Ensembl Gene Model | MGI Sequence Detail 31829 C57BL/6J ±  kb
transcript ENSMUST00000108856 Ensembl | MGI Sequence Detail 4489 Not Applicable  
polypeptide ENSMUSP00000104484 Ensembl | MGI Sequence Detail 1362 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 29
    Developmental Gene Expression 3
    Diseases 1
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:234235 Miyata H, et al., Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7704-10
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory