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Clhc1 Gene Detail
Summary
  • Symbol
    Clhc1
  • Name
    clathrin heavy chain linker domain containing 1
  • Synonyms
    1700034F02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920574
    NCBI Gene: 73324
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:29497950-29528360 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 16.79 cM, cytoband A4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    145 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920574
 protein coding gene Chr11:29497950-29528367 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018110
 protein coding gene Chr11:27565837-27601237 (+)
A/J MGP_AJ_G0018082
 protein coding gene Chr11:26541380-26573063 (+)
AKR/J MGP_AKRJ_G0018047
 protein coding gene Chr11:27406781-27438627 (+)
BALB/cJ MGP_BALBcJ_G0018050
 protein coding gene Chr11:26744930-26780121 (+)
C3H/HeJ MGP_C3HHeJ_G0017864
 protein coding gene Chr11:27320918-27352043 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018503
 protein coding gene Chr11:28498796-28535263 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016160
 protein coding gene Chr11:25180506-25210086 (+)
CAST/EiJ MGP_CASTEiJ_G0017426
 protein coding gene Chr11:27376960-27414366 (+)
CBA/J MGP_CBAJ_G0017838
 protein coding gene Chr11:29846795-29879549 (+)
DBA/2J MGP_DBA2J_G0017948
 protein coding gene Chr11:26401079-26433882 (+)
FVB/NJ MGP_FVBNJ_G0017940
 protein coding gene Chr11:26201537-26231621 (+)
LP/J MGP_LPJ_G0018020
 protein coding gene Chr11:27813969-27852205 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017966
 protein coding gene Chr11:30934793-30974347 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018543
 protein coding gene Chr11:27504841-27537760 (+)
PWK/PhJ MGP_PWKPhJ_G0017208
 protein coding gene Chr11:26489215-26520973 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017003
 protein coding gene Chr11:27200232-27235339 (+)
WSB/EiJ MGP_WSBEiJ_G0017479
 protein coding gene Chr11:27211600-27245559 (+)



Homology
more
  • Human Ortholog
    CLHC1, clathrin heavy chain linker domain containing 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CLHC1, clathrin heavy chain linker domain containing 1
  • Synonyms
    C2orf63
  • Links
    NCBI Gene ID: 130162
    neXtProt AC: NX_Q8NHS4
    UniProt: Q8NHS4

  • Chr Location
    2p16.1; chr2:55172547-55232563 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
  • All Mutations and Alleles
    35
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Gene trapped
    30
  • Targeted
    3
  • Genomic Mutations
    1 involving Clhc1
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    52 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 73324 NCBI Gene Model | MGI Sequence Detail 30411 C57BL/6J ±  kb
transcript NM_028504 RefSeq | MGI Sequence Detail 2185 C57BL/6  
polypeptide Q5M6W3 UniProt | EBI | MGI Sequence Detail 596 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000031591 clathrin heavy chain linker domain-containing protein 1
    (term hierarchy)
  • InterPro Domains
    IPR016024 Armadillo-type fold
    IPR012331 Clathrin, heavy chain, linker
    IPR017212 Clathrin heavy chain linker domain-containing protein 1
    IPR032755 Translin-associated factor X-interacting protein 1, N-terminal
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 3
References
more
  • Summaries
    All 31
    Phenotypes 12
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory