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Tbccd1 Gene Detail
Summary
  • Symbol
    Tbccd1
  • Name
    TBCC domain containing 1
  • Synonyms
    5730478M09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917823
    NCBI Gene: 70573
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:22631964-22676419 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 13.67 cM, cytoband B1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    685 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917823
 protein coding gene Chr16:22631964-22676441 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022672
 protein coding gene Chr16:20333244-20383721 (-)
A/J MGP_AJ_G0022633
 protein coding gene Chr16:19352757-19397297 (-)
AKR/J MGP_AKRJ_G0022608
 protein coding gene Chr16:20164396-20214026 (-)
BALB/cJ MGP_BALBcJ_G0022638
 protein coding gene Chr16:19554696-19598383 (-)
C3H/HeJ MGP_C3HHeJ_G0022402
 protein coding gene Chr16:20265189-20319484 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023088
 protein coding gene Chr16:20776031-20824826 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020606
 protein coding gene Chr16:20050022-20090400 (-)
CAST/EiJ MGP_CASTEiJ_G0021932
 protein coding gene Chr16:20269522-20316327 (-)
CBA/J MGP_CBAJ_G0022374
 protein coding gene Chr16:21648889-21698946 (-)
DBA/2J MGP_DBA2J_G0022506
 protein coding gene Chr16:19333682-19377765 (-)
FVB/NJ MGP_FVBNJ_G0022482
 protein coding gene Chr16:19303503-19347706 (-)
LP/J MGP_LPJ_G0022574
 protein coding gene Chr16:20091178-20137635 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022501
 protein coding gene Chr16:21193232-21239761 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023099
 protein coding gene Chr16:20112119-20157971 (-)
PWK/PhJ MGP_PWKPhJ_G0021672
 protein coding gene Chr16:19578266-19620179 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021502
 protein coding gene Chr16:19896725-19947021 (-)
WSB/EiJ MGP_WSBEiJ_G0021975
 protein coding gene Chr16:20074620-20123487 (-)



Homology
more
  • Human Ortholog
    TBCCD1, TBCC domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TBCCD1, TBCC domain containing 1
  • Links
    NCBI Gene ID: 55171
    neXtProt AC: NX_Q9NVR7
    UniProt: Q9NVR7

  • Chr Location
    3q27.3; chr3:186546067-186570543 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    762
  • Tissues
    15
  • cDNA Data
    65
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000004462 Ensembl Gene Model | MGI Sequence Detail 44456 C57BL/6J ±  kb
    transcript ENSMUST00000232075 Ensembl | MGI Sequence Detail 2645 Not Applicable  
    polypeptide ENSMUSP00000156210 Ensembl | MGI Sequence Detail 552 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • Protein Ontology
      PR:000032441 TBCC domain-containing protein 1
      (term hierarchy)
    • InterPro Domains
      IPR036223 Adenylate cyclase-associated CAP, C-terminal superfamily
      IPR006599 CARP motif
      IPR017901 C-CAP/cofactor C-like domain
      IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal
      IPR039589 TBCC domain-containing protein 1
      IPR012945 Tubulin binding cofactor C-like domain
    Molecular
    Reagents
    less
    • All nucleic 69
      cDNA 67
      Primer pair 2

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2146535, MGI:2146688
    References
    more
    • Summaries
      All 39
      Developmental Gene Expression 2
      Gene Ontology 4
      Phenotypes 11
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory