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Ttc9c Gene Detail
Summary
  • Symbol
    Ttc9c
  • Name
    tetratricopeptide repeat domain 9C
  • Synonyms
    2210019E14Rik, 6330408J23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917637
    NCBI Gene: 70387
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:8786439-8796697 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 5.67 cM, cytoband A
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    38 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917637
 protein coding gene Chr19:8786430-8797270 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024811
 protein coding gene Chr19:6092048-6102306 (-)
A/J MGP_AJ_G0024779
 protein coding gene Chr19:5761534-5771783 (-)
AKR/J MGP_AKRJ_G0024754
 protein coding gene Chr19:5853699-5863956 (-)
BALB/cJ MGP_BALBcJ_G0024779
 protein coding gene Chr19:5866260-5876630 (-)
C3H/HeJ MGP_C3HHeJ_G0024545
 protein coding gene Chr19:5933582-5943831 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025226
 protein coding gene Chr19:6212194-6231336 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022655
 protein coding gene Chr19:6009590-6019958 (-)
CAST/EiJ MGP_CASTEiJ_G0024018
 protein coding gene Chr19:5583332-5593607 (-)
CBA/J MGP_CBAJ_G0024519
 protein coding gene Chr19:6330936-6341198 (-)
DBA/2J MGP_DBA2J_G0024646
 protein coding gene Chr19:5593004-5604111 (-)
FVB/NJ MGP_FVBNJ_G0024613
 protein coding gene Chr19:5666780-5677038 (-)
LP/J MGP_LPJ_G0024733
 protein coding gene Chr19:5980393-5990651 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024640
 protein coding gene Chr19:6196900-6207158 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025275
 protein coding gene Chr19:5896700-5906970 (-)
PWK/PhJ MGP_PWKPhJ_G0023763
 protein coding gene Chr19:5262120-5272834 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023568
 protein coding gene Chr19:5504542-5518028 (-)
WSB/EiJ MGP_WSBEiJ_G0024080
 protein coding gene Chr19:5865923-5876185 (-)



Homology
more
  • Human Ortholog
    TTC9C, tetratricopeptide repeat domain 9C
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TTC9C, tetratricopeptide repeat domain 9C
  • Links
    NCBI Gene ID: 283237
    neXtProt AC: NX_Q8N5M4
    UniProt: Q8N5M4

  • Chr Location
    11q12.3; chr11:62728049-62740293 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    69
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000071660 Ensembl Gene Model | MGI Sequence Detail 10259 C57BL/6J ±  kb
transcript ENSMUST00000088092 Ensembl | MGI Sequence Detail 1585 Not Applicable  
polypeptide ENSMUSP00000085413 Ensembl | MGI Sequence Detail 171 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 70
    cDNA 70

    Microarray probesets 7
Other
Accession IDs
less
MGI:1917964
References
more
  • Summaries
    All 26
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory