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Yif1a Gene Detail
Summary
  • Symbol
    Yif1a
  • Name
    Yip1 interacting factor homolog A (S. cerevisiae)
  • Synonyms
    5330422J23Rik, 54TM, Yif1p
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915340
    NCBI Gene: 68090
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:5138566-5142907 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 4.24 cM, cytoband A
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    14 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915340
 protein coding gene Chr19:5138566-5142909 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024691
 protein coding gene Chr19:2015599-2019934 (+)
A/J MGP_AJ_G0024657
 protein coding gene Chr19:1912805-1918547 (+)
AKR/J MGP_AKRJ_G0024630
 protein coding gene Chr19:1962105-1966445 (+)
BALB/cJ MGP_BALBcJ_G0024657
 protein coding gene Chr19:1909135-1913827 (+)
C3H/HeJ MGP_C3HHeJ_G0024425
 protein coding gene Chr19:1965314-1970489 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025104
 protein coding gene Chr19:2072767-2077109 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022534
 protein coding gene Chr19:1843936-1848305 (+)
CAST/EiJ MGP_CASTEiJ_G0023897
 protein coding gene Chr19:1990228-1994600 (+)
CBA/J MGP_CBAJ_G0024396
 protein coding gene Chr19:2154685-2158985 (+)
DBA/2J MGP_DBA2J_G0024524
 protein coding gene Chr19:1897755-1902633 (+)
FVB/NJ MGP_FVBNJ_G0024491
 protein coding gene Chr19:1899886-1904163 (+)
LP/J MGP_LPJ_G0024610
 protein coding gene Chr19:2011797-2016105 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024521
 protein coding gene Chr19:2037256-2041556 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025152
 protein coding gene Chr19:1965409-1970155 (+)
PWK/PhJ MGP_PWKPhJ_G0023643
 protein coding gene Chr19:1935925-1940267 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023448
 protein coding gene Chr19:1954855-1959167 (+)
WSB/EiJ MGP_WSBEiJ_G0023959
 protein coding gene Chr19:1973156-1977811 (+)



Homology
more
  • Human Ortholog
    YIF1A, Yip1 interacting factor homolog A, membrane trafficking protein
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    YIF1A, Yip1 interacting factor homolog A, membrane trafficking protein
  • Synonyms
    54TM, FinGER7, YIF1, YIF1P
  • Links
    NCBI Gene ID: 10897
    neXtProt AC: NX_O95070
    UniProt: O95070

  • Chr Location
    11q13.2; chr11:66284580-66289145 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    711
  • Tissues
    5
  • cDNA Data
    112
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 68090 NCBI Gene Model | MGI Sequence Detail 4342 C57BL/6J ±  kb
    transcript NM_026553 RefSeq | MGI Sequence Detail 1493 C57BL/6  
    polypeptide Q91XB7 UniProt | EBI | MGI Sequence Detail 293 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 113
      cDNA 112
      Primer pair 1

      Microarray probesets 5
    References
    more
    • Summaries
      All 34
      Developmental Gene Expression 1
      Gene Ontology 4
      Phenotypes 5
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:319473 Barone V, et al., Yip1B isoform is localized at ER-Golgi intermediate and cis-Golgi compartments and is not required for maintenance of the Golgi structure in skeletal muscle. Histochem Cell Biol. 2015 Mar;143(3):235-43
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory