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Fancl Gene Detail
Summary
  • Symbol
    Fancl
  • Name
    Fanconi anemia, complementation group L
  • Synonyms
    2010322C19Rik, B230118H11Rik, gcd, Phf9, Pog
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914280
    NCBI Gene: 67030
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:26337084-26421883 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 15.85 cM, cytoband A2-A3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    827 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914280
 protein coding gene Chr11:26336135-26421883 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018097
 protein coding gene Chr11:24244426-24335450 (+)
A/J MGP_AJ_G0018070
 protein coding gene Chr11:23310910-23390074 (+)
AKR/J MGP_AKRJ_G0018034
 protein coding gene Chr11:24139180-24212357 (+)
BALB/cJ MGP_BALBcJ_G0018038
 protein coding gene Chr11:23456387-23531603 (+)
C3H/HeJ MGP_C3HHeJ_G0017852
 protein coding gene Chr11:24013152-24090942 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018490
 protein coding gene Chr11:25175146-25254275 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016148
 protein coding gene Chr11:22112198-22189463 (+)
CAST/EiJ MGP_CASTEiJ_G0017413
 protein coding gene Chr11:24074340-24159792 (+)
CBA/J MGP_CBAJ_G0017826
 protein coding gene Chr11:26297947-26383792 (+)
DBA/2J MGP_DBA2J_G0017936
 protein coding gene Chr11:23207247-23285185 (+)
FVB/NJ MGP_FVBNJ_G0017928
 protein coding gene Chr11:23000433-23075173 (+)
LP/J MGP_LPJ_G0018007
 protein coding gene Chr11:24368603-24450257 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017954
 protein coding gene Chr11:26877455-26961279 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018531
 protein coding gene Chr11:24230109-24314124 (+)
PWK/PhJ MGP_PWKPhJ_G0017194
 protein coding gene Chr11:23309156-23388598 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016991
 protein coding gene Chr11:23941826-24015340 (+)
WSB/EiJ MGP_WSBEiJ_G0017467
 protein coding gene Chr11:23881128-23957409 (+)



Homology
more
  • Human Ortholog
    FANCL, FA complementation group L
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FANCL, FA complementation group L
  • Synonyms
    FAAP43, PHF9, POG
  • Links
    NCBI Gene ID: 55120
    neXtProt AC: NX_Q9NW38
    UniProt: Q9NW38

  • Chr Location
    2p16.1; chr2:58159243-58241410 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with Fancl mouse models; 1 with human FANCL associations

Human Disease Mouse Models
      
IDs
 View 1 model
      
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    37 phenotypes from 3 alleles in 9 genetic backgrounds
    3 images
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygosity for mutations that inactivate the allele results in male and female infertility due to a defects in primordial germ cell proliferation. Homozygosity is embryonic lethal on some backgrounds.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    32
  • GO References
    12
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    779
  • Tissues
    17
  • cDNA Data
    16
  • Literature Summary
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 67030 NCBI Gene Model | MGI Sequence Detail 84800 C57BL/6J ±  kb
    transcript NM_025923 RefSeq | MGI Sequence Detail 1798 C57BL/6  
    polypeptide Q9CR14 UniProt | EBI | MGI Sequence Detail 375 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 23
      cDNA 19
      Primer pair 3
      Other 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-10019, MGI:1926122, MGI:2144571, MGI:95673
    References
    more
    • Summaries
      All 56
      Developmental Gene Expression 8
      Diseases 1
      Gene Ontology 12
      Phenotypes 16
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:333943 Cen C, et al., Fancb deficiency causes premature ovarian insufficiency in mice. Biol Reprod. 2022 Sep 12;107(3):790-799
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory