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Ccdc107 Gene Detail
Summary
  • Symbol
    Ccdc107
  • Name
    coiled-coil domain containing 107
  • Synonyms
    1110032O22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913423
    NCBI Gene: 622404
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:43493365-43495921 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 23.04 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    53 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913423
 protein coding gene Chr4:43492900-43495921 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028208
 protein coding gene Chr4:41610606-41613627 (+)
A/J MGP_AJ_G0028164
 protein coding gene Chr4:40134793-40137814 (+)
AKR/J MGP_AKRJ_G0028116
 protein coding gene Chr4:41047137-41050158 (+)
BALB/cJ MGP_BALBcJ_G0028184
 protein coding gene Chr4:40222264-40225285 (+)
C3H/HeJ MGP_C3HHeJ_G0027906
 protein coding gene Chr4:41672469-41675490 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028625
 protein coding gene Chr4:43172051-43175072 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025937
 protein coding gene Chr4:37581724-37584738 (+)
CAST/EiJ MGP_CASTEiJ_G0027346
 protein coding gene Chr4:41176253-41179263 (+)
CBA/J MGP_CBAJ_G0027872
 protein coding gene Chr4:44475755-44478776 (+)
DBA/2J MGP_DBA2J_G0028021
 protein coding gene Chr4:40043288-40046309 (+)
FVB/NJ MGP_FVBNJ_G0027988
 protein coding gene Chr4:39264650-39267671 (+)
LP/J MGP_LPJ_G0028120
 protein coding gene Chr4:41661956-41664977 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028012
 protein coding gene Chr4:47746087-47749108 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028661
 protein coding gene Chr4:41240647-41243668 (+)
PWK/PhJ MGP_PWKPhJ_G0027072
 protein coding gene Chr4:40087527-40090862 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026900
 protein coding gene Chr4:40828041-40831021 (+)
WSB/EiJ MGP_WSBEiJ_G0027426
 protein coding gene Chr4:41142399-41145420 (+)



Homology
more
  • Human Ortholog
    CCDC107, coiled-coil domain containing 107
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC107, coiled-coil domain containing 107
  • Synonyms
    PSEC0222
  • Links
    NCBI Gene ID: 203260
    neXtProt AC: NX_Q8WV48
    UniProt: Q8WV48

  • Chr Location
    9p13.3; chr9:35658290-35661511 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    27
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 622404 NCBI Gene Model | MGI Sequence Detail 2557 C57BL/6J ±  kb
transcript NM_001037913 RefSeq | MGI Sequence Detail 814 C57BL/6  
polypeptide Q9DCC3 UniProt | EBI | MGI Sequence Detail 242 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 28
    Genomic 1
    cDNA 27

    Microarray probesets 3
References
more
  • Summaries
    All 26
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:178085 Rosenbluh J, et al., RMRP Is a Non-Coding RNA Essential for Early Murine Development. PLoS One. 2011;6(10):e26270
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory