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Trim3 Gene Detail
Summary
  • Symbol
    Trim3
  • Name
    tripartite motif-containing 3
  • Synonyms
    BERP1, HAC1, Rnf22
  • Feature Type
    protein coding gene
  • IDs
    MGI:1860040
    NCBI Gene: 55992
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:105253670-105282778 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 55.91 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    193 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1860040
 protein coding gene Chr7:105253670-105282805 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032757
 protein coding gene Chr7:108865745-108896673 (-)
A/J MGP_AJ_G0032737
 protein coding gene Chr7:106014337-106043460 (-)
AKR/J MGP_AKRJ_G0032670
 protein coding gene Chr7:108788497-108817613 (-)
BALB/cJ MGP_BALBcJ_G0032743
 protein coding gene Chr7:105729761-105759985 (-)
C3H/HeJ MGP_C3HHeJ_G0032452
 protein coding gene Chr7:108893302-108925270 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033248
 protein coding gene Chr7:113225274-113256917 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030232
 protein coding gene Chr7:107992561-108022254 (-)
CAST/EiJ MGP_CASTEiJ_G0031782
 protein coding gene Chr7:100720299-100751907 (-)
CBA/J MGP_CBAJ_G0032426
 protein coding gene Chr7:116982731-117020389 (-)
DBA/2J MGP_DBA2J_G0032579
 protein coding gene Chr7:104283380-104313076 (-)
FVB/NJ MGP_FVBNJ_G0032532
 protein coding gene Chr7:104089798-104122085 (-)
LP/J MGP_LPJ_G0032670
 protein coding gene Chr7:110267071-110299250 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032564
 protein coding gene Chr7:118577660-118606810 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033269
 protein coding gene Chr7:107852717-107884843 (-)
PWK/PhJ MGP_PWKPhJ_G0031495
 protein coding gene Chr7:97223407-97253275 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031344
 protein coding gene Chr7:94963972-94995358 (-)
WSB/EiJ MGP_WSBEiJ_G0031899
 protein coding gene Chr7:108495589-108527374 (-)



Homology
more
  • Human Ortholog
    TRIM3, tripartite motif containing 3
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRIM3, tripartite motif containing 3
  • Synonyms
    BERP, HAC1, RNF22, RNF97
  • Links
    NCBI Gene ID: 10612
    neXtProt AC: NX_O75382
    UniProt: O75382

  • Chr Location
    11p15.4; chr11:6448613-6474459 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 3 alleles in 3 genetic backgrounds
    17 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele have decreased susceptibility to pharmacologically induced seizure as well as reduced miniature inhibitory synaptic current amplitude in cortical neurons. Mice homozygous for another null allele are viable and fertile.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    26
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    837
  • Tissues
    91
  • cDNA Data
    55
  • Literature Summary
    5
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000036989 Ensembl Gene Model | MGI Sequence Detail 29109 C57BL/6J ±  kb
transcript ENSMUST00000057525 Ensembl | MGI Sequence Detail 3016 Not Applicable  
polypeptide ENSMUSP00000053384 Ensembl | MGI Sequence Detail 744 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 55
    cDNA 55

    Microarray probesets 3
References
more
  • Summaries
    All 56
    Developmental Gene Expression 5
    Gene Ontology 9
    Phenotypes 17
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory