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Cabp5 Gene Detail
Summary
  • Symbol
    Cabp5
  • Name
    calcium binding protein 5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1352746
    NCBI Gene: 29865
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:13132057-13142812 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 7.87 cM, cytoband A2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    40 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1352746
 protein coding gene Chr7:13119885-13142812 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031673
 protein coding gene Chr7:10791419-10802169 (+)
A/J MGP_AJ_G0031647
 protein coding gene Chr7:10657969-10668686 (+)
AKR/J MGP_AKRJ_G0031570
 protein coding gene Chr7:10906320-10917025 (+)
BALB/cJ MGP_BALBcJ_G0031652
 protein coding gene Chr7:10753717-10764420 (+)
C3H/HeJ MGP_C3HHeJ_G0031373
 protein coding gene Chr7:11050617-11061232 (+)
C57BL/6NJ MGP_C57BL6NJ_G0032116
 protein coding gene Chr7:11410359-11421082 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029207
 protein coding gene Chr7:12481706-12492407 (+)
CAST/EiJ MGP_CASTEiJ_G0030731
 protein coding gene Chr7:8534142-8544860 (+)
CBA/J MGP_CBAJ_G0031331
 protein coding gene Chr7:11594964-11605699 (+)
DBA/2J MGP_DBA2J_G0031489
 protein coding gene Chr7:10515582-10526309 (+)
FVB/NJ MGP_FVBNJ_G0031445
 protein coding gene Chr7:10538367-10549096 (+)
LP/J MGP_LPJ_G0031575
 protein coding gene Chr7:10916818-10927575 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031480
 protein coding gene Chr7:11702547-11713298 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0032146
 protein coding gene Chr7:10695734-10706469 (+)
PWK/PhJ MGP_PWKPhJ_G0030458
 protein coding gene Chr7:8992720-9003615 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030285
 protein coding gene Chr7:6751567-6767960 (+)
WSB/EiJ MGP_WSBEiJ_G0030826
 protein coding gene Chr7:10718421-10729169 (+)



Homology
more
  • Human Ortholog
    CABP5, calcium binding protein 5
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CABP5, calcium binding protein 5
  • Synonyms
    CABP3
  • Links
    NCBI Gene ID: 56344
    neXtProt AC: NX_Q9NP86
    UniProt: Q9NP86

  • Chr Location
    19q13.33; chr19:48029383-48044079 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 2 alleles in 2 genetic backgrounds
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit reduced flash sensitivity in ganglion cells.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    716
  • Tissues
    5
  • cDNA Data
    5
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000005649 Ensembl Gene Model | MGI Sequence Detail 10756 C57BL/6J ±  kb
    transcript ENSMUST00000117400 Ensembl | MGI Sequence Detail 1258 Not Applicable  
    polypeptide ENSMUSP00000112415 Ensembl | MGI Sequence Detail 178 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 6
      cDNA 6

      Microarray probesets 3
    References
    more
    • Summaries
      All 32
      Developmental Gene Expression 6
      Gene Ontology 3
      Phenotypes 7
    • Earliest
      J:59389 Haeseleer F, et al., Five members of a novel Ca(2+)-binding protein (CABP) subfamily with similarity to calmodulin. J Biol Chem. 2000 Jan 14;275(2):1247-60
    • Latest
      J:240687 Park KU, et al., Gsg1, Trnp1, and Tmem215 Mark Subpopulations of Bipolar Interneurons in the Mouse Retina. Invest Ophthalmol Vis Sci. 2017 Feb 01;58(2):1137-1150
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory