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Ppargc1a Gene Detail
Summary
  • Symbol
    Ppargc1a
  • Name
    peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
  • Synonyms
    A830037N07Rik, Gm11133, Pgc1, Pgc-1alpha, Pgc-1alphaa, Pgco1, PPAR Gamma Coactivator-1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1342774
    NCBI Gene: 19017
  • Alliance
    gene page
  • Transcription Start Sites
    14 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:51611592-51725068 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 27.02 cM, cytoband C1
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    768 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1342774
 protein coding gene Chr5:51611591-52273316 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029542
 protein coding gene Chr5:50385447-50504929 (-)
A/J MGP_AJ_G0029510
 protein coding gene Chr5:48612772-48729002 (-)
AKR/J MGP_AKRJ_G0029458
 protein coding gene Chr5:50269993-50386804 (-)
BALB/cJ MGP_BALBcJ_G0029519
 protein coding gene Chr5:49083021-49197664 (-)
C3H/HeJ MGP_C3HHeJ_G0029242
 protein coding gene Chr5:50444384-50561568 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029973
 protein coding gene Chr5:52521630-52642764 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027213
 protein coding gene Chr5:45413480-45520773 (-)
CAST/EiJ MGP_CASTEiJ_G0028650
 protein coding gene Chr5:49414923-49538655 (-)
CBA/J MGP_CBAJ_G0029211
 protein coding gene Chr5:54118438-54244511 (-)
DBA/2J MGP_DBA2J_G0029357
 protein coding gene Chr5:48684330-48797559 (-)
FVB/NJ MGP_FVBNJ_G0029317
 protein coding gene Chr5:48005860-48133211 (-)
LP/J MGP_LPJ_G0029442
 protein coding gene Chr5:50852410-50969785 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029345
 protein coding gene Chr5:55223655-55367804 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030006
 protein coding gene Chr5:49771235-49890895 (-)
PWK/PhJ MGP_PWKPhJ_G0028374
 protein coding gene Chr5:47734159-47850912 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028208
 protein coding gene Chr5:49181255-49298961 (-)
WSB/EiJ MGP_WSBEiJ_G0028731
 protein coding gene Chr5:49810410-49929958 (-)



Homology
more
  • Human Ortholog
    PPARGC1A, PPARG coactivator 1 alpha
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PPARGC1A, PPARG coactivator 1 alpha
  • Synonyms
    LEM6, PGC1, PGC1A, PGC-1alpha, PGC-1(alpha), PGC-1v, PPARGC1
  • Links
    NCBI Gene ID: 10891
    neXtProt AC: NX_Q9UBK2
    UniProt: Q9UBK2

  • Chr Location
    4p15.2; chr4:23755041-24472905 (-)  GRCh38
Human Diseases
more
  • Diseases
    2 with Ppargc1a mouse models; 8 with human PPARGC1A associations

Human Disease Mouse Models
      
IDs
 View 1 model
      
IDs
 View 1 model
      
IDs
IDs
IDs
IDs
IDs
IDs
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    3 with disease annotations
  • References
    3 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    126 phenotypes from 8 alleles in 15 genetic backgrounds
    45 phenotypes from multigenic genotypes
    3 images
    270 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous null mice display partial postnatal lethality, abnormal glucose and insulin homeostasis, resistance to diet induced obesity, increased oxygen consumption, spongiform encephalopathy, hyperactivity, increased startle reflex, and limb grasping.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    98
  • GO References
    36
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1131
  • Tissues
    143
  • cDNA Data
    45
  • Literature Summary
    96
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000029167 Ensembl Gene Model | MGI Sequence Detail 113477 C57BL/6J ±  kb
    transcript ENSMUST00000132734 Ensembl | MGI Sequence Detail 6464 Not Applicable  
    polypeptide ENSMUSP00000117040 Ensembl | MGI Sequence Detail 797 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 62
      cDNA 46
      Primer pair 14
      Other 2

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGI:1203734, MGI:2443650, MGI:3779388
    References
    more
    • Summaries
      All 609
      Developmental Gene Expression 96
      Diseases 3
      Gene Ontology 36
      Phenotypes 270
    • Earliest
      J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
    • Latest
      J:346032 Sugimoto T, et al., Peroxisome proliferator-activated receptor gamma coactivator 1alpha regulates downstream of tyrosine kinase-7 (Dok-7) expression important for neuromuscular junction formation. Sci Rep. 2024 Jan 20;14(1):1780
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory