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R3hcc1l Gene Detail
Summary
  • Symbol
    R3hcc1l
  • Name
    R3H domain and coiled-coil containing 1 like
  • Synonyms
    1700036B12Rik, D19Ertd386e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1196316
    NCBI Gene: 52013
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:42507198-42580782 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 36.47 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    484 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1196316
 protein coding gene Chr19:42506419-42580782 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025146
 protein coding gene Chr19:41854303-41930776 (+)
A/J MGP_AJ_G0025123
 protein coding gene Chr19:39851004-39921093 (+)
AKR/J MGP_AKRJ_G0025091
 protein coding gene Chr19:41141585-41211732 (+)
BALB/cJ MGP_BALBcJ_G0025117
 protein coding gene Chr19:39908251-39979113 (+)
C3H/HeJ MGP_C3HHeJ_G0024877
 protein coding gene Chr19:41297572-41367125 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025560
 protein coding gene Chr19:42925741-43000934 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022974
 protein coding gene Chr19:39200289-39273720 (+)
CAST/EiJ MGP_CASTEiJ_G0024342
 protein coding gene Chr19:40981464-41065822 (+)
CBA/J MGP_CBAJ_G0024857
 protein coding gene Chr19:45009234-45083253 (+)
DBA/2J MGP_DBA2J_G0024989
 protein coding gene Chr19:39690759-39761410 (+)
FVB/NJ MGP_FVBNJ_G0024950
 protein coding gene Chr19:39466866-39536106 (+)
LP/J MGP_LPJ_G0025075
 protein coding gene Chr19:41843613-41914075 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024981
 protein coding gene Chr19:44624780-44702293 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025618
 protein coding gene Chr19:41200051-41277175 (+)
PWK/PhJ MGP_PWKPhJ_G0024091
 protein coding gene Chr19:39587831-39662507 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023895
 protein coding gene Chr19:39939877-40016889 (+)
WSB/EiJ MGP_WSBEiJ_G0024412
 protein coding gene Chr19:41345543-41416445 (+)



Homology
more
  • Human Ortholog
    R3HCC1L, R3H domain and coiled-coil containing 1 like
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    R3HCC1L, R3H domain and coiled-coil containing 1 like
  • Synonyms
    C10orf28, GIDRP86, GIDRP88, PSORT
  • Links
    NCBI Gene ID: 27291
    neXtProt AC: NX_Q7Z5L2
    UniProt: Q7Z5L2

  • Chr Location
    10q24.2; chr10:98134624-98244897 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    805
  • Tissues
    31
  • cDNA Data
    12
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000025184 Ensembl Gene Model | MGI Sequence Detail 73585 C57BL/6J ±  kb
    transcript ENSMUST00000026188 Ensembl | MGI Sequence Detail 4112 Not Applicable  
    polypeptide ENSMUSP00000026188 Ensembl | MGI Sequence Detail 775 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      3 Sequences
    • Protein Ontology
      PR:000007974 coiled-coil domain-containing protein R3HCC1L
      (term hierarchy)
    • InterPro Domains
      IPR039884 Coiled-coil domain-containing protein R3HC1/R3HCL
      IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
      IPR035979 RNA-binding domain superfamily
    Molecular
    Reagents
    less
    • All nucleic 13
      cDNA 12
      Primer pair 1

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:1920569, MGI:2147546
    References
    more
    • Summaries
      All 37
      Developmental Gene Expression 2
      Gene Ontology 2
      Phenotypes 11
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:228563 Koscielny G, et al., The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Nucleic Acids Res. 2014 Jan;42(Database issue):D802-9
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory