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Calu Gene Detail
Summary
  • Symbol
    Calu
  • Name
    calumenin
  • Synonyms
    9530075H20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1097158
    NCBI Gene: 12321
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:29348105-29376674 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 12.36 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    167 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1097158
 protein coding gene Chr6:29348068-29377109 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030520
 protein coding gene Chr6:27135635-27166421 (+)
A/J MGP_AJ_G0030493
 protein coding gene Chr6:25989032-26018076 (+)
AKR/J MGP_AKRJ_G0030420
 protein coding gene Chr6:26847625-26877829 (+)
BALB/cJ MGP_BALBcJ_G0030503
 protein coding gene Chr6:26144580-26173474 (+)
C3H/HeJ MGP_C3HHeJ_G0030216
 protein coding gene Chr6:26845743-26874673 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030957
 protein coding gene Chr6:27921977-27951958 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028168
 protein coding gene Chr6:24196562-24225324 (+)
CAST/EiJ MGP_CASTEiJ_G0029618
 protein coding gene Chr6:26642682-26674697 (+)
CBA/J MGP_CBAJ_G0030194
 protein coding gene Chr6:28963455-28995686 (+)
DBA/2J MGP_DBA2J_G0030338
 protein coding gene Chr6:25931247-25960431 (+)
FVB/NJ MGP_FVBNJ_G0030292
 protein coding gene Chr6:25687274-25716721 (+)
LP/J MGP_LPJ_G0030425
 protein coding gene Chr6:27269731-27300794 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030328
 protein coding gene Chr6:31481875-31513965 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030987
 protein coding gene Chr6:26721165-26752744 (+)
PWK/PhJ MGP_PWKPhJ_G0029332
 protein coding gene Chr6:25467158-25496922 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029168
 protein coding gene Chr6:26441082-26469793 (+)
WSB/EiJ MGP_WSBEiJ_G0029694
 protein coding gene Chr6:26695177-26724779 (+)



Homology
more
  • Human Ortholog
    CALU, calumenin
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CALU, calumenin
  • Links
    NCBI Gene ID: 813
    neXtProt AC: NX_O43852
    UniProt: O43852

  • Chr Location
    7q32.1; chr7:128739292-128773400 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    18
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    927
  • Tissues
    121
  • cDNA Data
    443
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 12321 NCBI Gene Model | MGI Sequence Detail 28570 C57BL/6J ±  kb
    transcript NM_184053 RefSeq | MGI Sequence Detail 3229 C57BL/6  
    polypeptide O35887 UniProt | EBI | MGI Sequence Detail 315 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 449
      cDNA 444
      Primer pair 4
      Other 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2442053
    References
    more
    • Summaries
      All 44
      Developmental Gene Expression 5
      Gene Ontology 7
      Phenotypes 10
    • Earliest
      J:154091 Gogstad GO, et al., Characterization of the proteins of isolated human platelet alpha-granules. Evidence for a separate alpha-granule-pool of the glycoproteins IIb and IIIa. Biochim Biophys Acta. 1981 Sep 29;670(2):150-62
    • Latest
      J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory