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Barx1 Gene Detail
Summary
  • Symbol
    Barx1
  • Name
    BarH-like homeobox 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:103124
    NCBI Gene: 12022
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:48816512-48819983 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 24.90 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_103124
 protein coding gene Chr13:48816474-48819983 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020526
 protein coding gene Chr13:47582972-47586481 (+)
A/J MGP_AJ_G0020480
 protein coding gene Chr13:45907648-45911157 (+)
AKR/J MGP_AKRJ_G0020457
 protein coding gene Chr13:47192591-47196100 (+)
BALB/cJ MGP_BALBcJ_G0020476
 protein coding gene Chr13:46120589-46124098 (+)
C3H/HeJ MGP_C3HHeJ_G0020275
 protein coding gene Chr13:47021337-47024846 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020909
 protein coding gene Chr13:49024108-49027617 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018494
 protein coding gene Chr13:43903866-43907403 (+)
CAST/EiJ MGP_CASTEiJ_G0019790
 protein coding gene Chr13:47012627-47016122 (+)
CBA/J MGP_CBAJ_G0020236
 protein coding gene Chr13:51040869-51044378 (+)
DBA/2J MGP_DBA2J_G0020358
 protein coding gene Chr13:45435445-45438954 (+)
FVB/NJ MGP_FVBNJ_G0020337
 protein coding gene Chr13:44946207-44949716 (+)
LP/J MGP_LPJ_G0020433
 protein coding gene Chr13:47809097-47812606 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020366
 protein coding gene Chr13:50806511-50810020 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020952
 protein coding gene Chr13:46889166-46892675 (+)
PWK/PhJ MGP_PWKPhJ_G0019546
 protein coding gene Chr13:45596090-45599599 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019374
 protein coding gene Chr13:45597851-45601352 (+)
WSB/EiJ MGP_WSBEiJ_G0019852
 protein coding gene Chr13:47204705-47208214 (+)



Homology
more
  • Human Ortholog
    BARX1, BARX homeobox 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    BARX1, BARX homeobox 1
  • Links
    NCBI Gene ID: 56033
    neXtProt AC: NX_Q9HBU1
    UniProt: Q9HBU1

  • Chr Location
    9q22.32; chr9:93951627-93955355 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 2 genetic backgrounds
    1 phenotype from multigenic genotypes
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null mutation die around E13 embryonic stage with shrunken and malformed stomach or shortly after birth with cleft palate and abnormal tooth development depending on strain background.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1082
  • Tissues
    212
  • cDNA Data
    20
  • Literature Summary
    94
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 12022 NCBI Gene Model | MGI Sequence Detail 3472 C57BL/6J ±  kb
    transcript NM_007526 RefSeq | MGI Sequence Detail 1366 Not Specified  
    polypeptide Q9ER42 UniProt | EBI | MGI Sequence Detail 254 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 43
      Genomic 2
      cDNA 21
      Primer pair 9
      Other 11

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-23988
    References
    more
    • Summaries
      All 117
      Developmental Gene Expression 94
      Gene Ontology 4
      Phenotypes 11
    • Earliest
      J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
    • Latest
      J:344102 Racedo SE, et al., Dgcr8 functions in the secondary heart field for outflow tract and right ventricle development in mammals. Dev Biol. 2024 Feb;506:72-84
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory