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Gene Expression Data
Assay Details
Assay
Reference: J:207523 Edlund RK, et al., Foxi transcription factors promote pharyngeal arch development by regulating formation of FGF signaling centers. Dev Biol. 2014 Jun 1;390(1):1-13
Assay type: RNA in situ
MGI Accession ID: MGI:7428394
Gene symbol: Foxi3
Gene name: forkhead box I3
Probe: Foxi3 cDNA1
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 1-6ss left: embryonic day 8.0 (more )
Note: 6 somites
Structure Level Pattern Image Note
TS12: branchial arch Present Widespread 1_6ss left Expressed broadly in the pharyngeal region.
Specimen 1-6ss middle: embryonic day 8.0 (more )
Note: 6 somites
Structure Level Pattern Image Note
TS12: branchial arch Present Widespread 1_6ss middle Expressed broadly in the pharyngeal region.
Specimen 1-6ss right: embryonic day 8.0 (more )
Note: 6 somites
Structure Level Pattern Image Note
TS12: branchial arch ectoderm Present 1_6ss right
TS12: branchial arch endoderm Present 1_6ss right
TS12: branchial arch mesenchyme Absent 1_6ss right
Specimen 1-15ss left: embryonic day 9.0 (more )
Note: 15 somites
Structure Level Pattern Image Note
TS14: 1st branchial groove ectoderm Present 1_15ss left
TS14: 2nd branchial groove ectoderm Present 1_15ss left
TS14: 1st branchial arch ectoderm Weak Regionally restricted 1_15ss left A low level expression anterior to 1st branchial arch.
Specimen 1-15ss middle: embryonic day 9.0 (more )
Note: 15 somites
Structure Level Pattern Image Note
TS14: 1st branchial groove ectoderm Present 1_15ss middle
TS14: 2nd branchial groove ectoderm Present 1_15ss middle
TS14: branchial arch ectoderm Weak Regionally restricted 1_15ss middle A low level expression anterior to 1st branchial arch.
Specimen 1-25ss left: embryonic day 9.5 (more )
Note: 25 somites
Structure Level Pattern Image Note
TS15: 2nd branchial groove ectoderm Present 1_25ss left Stronger expression.
TS15: 3rd branchial groove ectoderm Present 1_25ss left Stronger expression.
TS15: 1st branchial arch ectoderm Weak Regionally restricted 1_25ss left A low level expression anterior to 1st branchial arch.
TS15: 1st branchial groove ectoderm Weak 1_25ss left
Specimen 1-25ss middle: embryonic day 9.5 (more )
Note: 25 somites
Structure Level Pattern Image Note
TS15: 1st branchial groove ectoderm Weak 1_25ss middle
TS15: 2nd branchial groove ectoderm Present 1_25ss middle Stronger expression.
TS15: 3rd branchial groove ectoderm Present 1_25ss middle Stronger expression.
TS15: 1st branchial arch ectoderm Weak Regionally restricted 1_25ss middle A low level expression anterior to 1st branchial arch.
Specimen 1-25ss right: embryonic day 9.5 (more )
Note: 25 somites
Structure Level Pattern Image Note
TS15: 2nd branchial groove ectoderm Present 1_25ss right Stronger expression.
TS15: 2nd branchial pouch endoderm Present 1_25ss right Stronger expression.
TS15: 1st branchial groove ectoderm Weak 1_25ss right
TS15: 1st branchial pouch endoderm Weak 1_25ss right
TS15: 1st branchial arch ectoderm Weak Regionally restricted 1_25ss right A low level expression anterior to 1st branchial arch.
TS15: 1st branchial arch mesenchyme Absent 1_25ss right
TS15: 2nd branchial arch mesenchyme Absent 1_25ss right
Specimen 7A left: embryonic day 9.0 (more )
Note: 15 somites
Structure Level Pattern Image Note
TS14: 1st branchial groove ectoderm Present 7A-1
TS14: 2nd branchial groove ectoderm Present 7A-1
TS14: 1st branchial arch ectoderm Weak Regionally restricted 7A-1 A low level expression anterior to 1st branchial arch.
Specimen 7A right: embryonic day 9.0 (more )
Note: 15 somites
Structure Level Pattern Image Note
TS14: 1st branchial groove ectoderm Present 7A-2
TS14: 1st branchial pouch endoderm Present 7A-2
TS14: 2nd branchial groove ectoderm Present 7A-2
TS14: 2nd branchial pouch endoderm Present 7A-2
Specimen not shown: embryonic day 9.0 (more )
Note: 15 somites
Structure Level Pattern Image Note
TS14: 1st branchial pouch endoderm Present
TS14: 2nd branchial pouch endoderm Present
TS14: 1st branchial arch mesenchyme Absent
TS14: 2nd branchial arch mesenchyme Absent
Specimen not shown: embryonic day 9.5 (more )
Note: 25 somites
Structure Level Pattern Image Note
TS15: 3rd branchial groove ectoderm Present Stronger expression.
TS15: 3rd branchial pouch endoderm Present Stronger expression.
TS15: 3rd branchial arch mesenchyme Absent
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory