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Gene Expression Data
Assay Details
Assay
Reference: J:228903 Irie M, et al., Cognitive Function Related to the Sirh11/Zcchc16 Gene Acquired from an LTR Retrotransposon in Eutherians. PLoS Genet. 2015 Sep;11(9):e1005521
Assay type: RT-PCR
MGI Accession ID: MGI:6887471
Gene symbol: Rtl4
Gene name: retrotransposon Gag like 4
Probe: Sirh11-F9, Sirh11-R9
Probe preparation: labelled with SYBR green
Assay notes: Quantitative RT-PCR. Relative expression was normalized to Actb.
Results
Image: 4C ©

 Sample Information Bands Other Sample Information
Lane AgeStructure Size Not Specified Amount Genetic BackgroundMutant Allele(s)Sex
Cerebellum WT P TS28: cerebellum Present 1 µg; total RNA C57BL/6J Not Specified
Cerebellum KO P TS28: cerebellum Present (a) 1 µg; total RNA B6.Cg-Rtl4tm1.1Fuis Rtl4tm1.1Fuis/Rtl4tm1.1FuisNot Specified
Hippocampus WT P TS28: hippocampus Present 1 µg; total RNA C57BL/6J Not Specified
Hippocampus KO P TS28: hippocampus Present (a) 1 µg; total RNA B6.Cg-Rtl4tm1.1Fuis Rtl4tm1.1Fuis/Rtl4tm1.1FuisNot Specified
Striatum WT P TS28: corpus striatum Present 1 µg; total RNA C57BL/6J Not Specified
Striatum KO P TS28: corpus striatum Present (a) 1 µg; total RNA B6.Cg-Rtl4tm1.1Fuis Rtl4tm1.1Fuis/Rtl4tm1.1FuisNot Specified
Cerebrum WT P TS28: telencephalon Present 1 µg; total RNA C57BL/6J Not Specified
Cerebrum KO P TS28: telencephalon Present (a) 1 µg; total RNA B6.Cg-Rtl4tm1.1Fuis Rtl4tm1.1Fuis/Rtl4tm1.1FuisNot Specified
Diencephalon WT P TS28: diencephalon Present (b) 1 µg; total RNA C57BL/6J Not Specified
Diencephalon KO P TS28: diencephalon Present (c) 1 µg; total RNA B6.Cg-Rtl4tm1.1Fuis Rtl4tm1.1Fuis/Rtl4tm1.1FuisNot Specified
Mesencephalon WT P TS28: midbrain Present (b) 1 µg; total RNA C57BL/6J Not Specified
Mesencephalon KO P TS28: midbrain Present (a) 1 µg; total RNA involves: C57BL/6 Not Specified
Brainstem WT P TS28: brainstem Present (b) 1 µg; total RNA C57BL/6J Not Specified
Brainstem KO P TS28: brainstem Present (c) 1 µg; total RNA involves: C57BL/6 Not Specified
Notes:
(a) The higher expression level in the mutant compared to wild type was significant.
(b) The mesencephalon, diencephalon, and brainstem exhibited a relatively higher expression compared with other parts of the brain.
(c) There was no significant difference in expression level of the mutant compared to wild type.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
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