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Gene Expression Data
Assay Details
Assay
Reference: J:198109 Oeschger FM, et al., Gene expression analysis of the embryonic subplate. Cereb Cortex. 2012 Jun;22(6):1343-59
Assay type: RNA in situ
MGI Accession ID: MGI:6258669
Gene symbol: Unc5c
Gene name: unc-5 netrin receptor C
Probe: Unc5c cDNA2
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 2e: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cortical subplate Strong 2e Individual subplate cells with very strong labeling were seen across the entire rostrocaudal expanse of the cortex.

Specimen 3g wild-type: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cortical subplate Present 3g Wild-type Sparse labeling was noted in the wild type.

Specimen 3g Reeler: embryonic day 15.5; Relnrl-Orl/Relnrl-Orl (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Present Regionally restricted 3g Reeler Few, but clearly labeled cells were visible in the superplate of the reeler mutant.

Specimen 4d E13.5: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: cerebral cortex Absent 4d E13.5

Specimen 4d E14.5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cortical subplate Present 4d E14.5

Specimen 4d E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cortical subplate Present 4d E15.5
TS23: cortical plate Present Regionally restricted 4d E15.5 Expression was detected in the very lateral cortical plate.

Specimen 4d E17.5: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: cortical plate Strong Regionally restricted 4d E17.5 Expression was primarily in the lateral cortical plate.
TS25: cortical subplate Weak 4d E17.5

Specimen 4d P8: postnatal day 8 (more )
Structure Level Pattern Image Note
TS28: cortical layer V Weak 4d P8
TS28: cortical layer VI Weak Regionally restricted 4d P8 Expression was in upper layer VI.

Specimen 4d Adult: postnatal adult (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Weak Ubiquitous 4d Adult
TS28: cortical layer V Weak 4d Adult
TS28: cortical layer VI Weak Regionally restricted 4d Adult Expression was in upper layer VI.

Specimen 5e: embryonic day 15.5; Gad1tm1.1Tama/Gad1+ (more )
Note: Double labeled: red - Unc5c; green - Gad1 (assay MGI:6258913).
Structure Level Pattern Image Note
TS23: cortical subplate Present 5f , 5h , 5e There was no colocalization with Gad1 labeling.

Specimen S4k: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: caudal ganglionic eminence Present S4k
TS23: cortical subplate Present S4k
TS23: thalamus Present S4k

Specimen S4k': postnatal day 8 (more )
Structure Level Pattern Image Note
TS28: basal ganglia Present S4k'
TS28: hippocampus Present S4k'
TS28: thalamus Present S4k'

Specimen not shown: embryonic day 13.5 (more )
Note: Table S5
Structure Level Pattern Image Note
TS22: epithalamus Present
TS22: prethalamus Present
TS22: thalamus Present Regionally restricted Expression was detected in the medioventral part.

Specimen not shown: embryonic day 14.5 (more )
Note: Table S5
Structure Level Pattern Image Note
TS22: basal ganglia Present Regionally restricted Expression was detected in the claustrum.
TS22: epithalamus Present
TS22: prethalamus Present
TS22: thalamus Present Regionally restricted Expression was detected in the medioventral part.

Specimen not shown: embryonic day 15.5 (more )
Note: Table S5
Structure Level Pattern Image Note
TS23: basal ganglia Present Regionally restricted Expression was detected in the claustrum.
TS23: dorsal lateral geniculate nucleus Present
TS23: epithalamus Present
TS23: habenula Present
TS23: prethalamus Present
TS23: thalamus Present

Specimen not shown: embryonic day 17.5 (more )
Note: Table S5
Structure Level Pattern Image Note
TS25: basal ganglia Present Regionally restricted Expression was detected in the claustrum.
TS25: dorsal lateral geniculate nucleus Present
TS25: main olfactory bulb Present
TS25: thalamus Present

Specimen not shown: postnatal day 8 (more )
Note: Table S5
Structure Level Pattern Image Note
TS28: claustrum Ambiguous
TS28: hippocampus Present Single cells
TS28: thalamus Present Regionally restricted Expression was especially noted in the ventromedial nucleus.

Specimen not shown: postnatal adult (more )
Note: Table S5
Structure Level Pattern Image Note
TS28: diencephalon Weak Ubiquitous
TS28: telencephalon Weak Ubiquitous


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/16/2024
MGI 6.23
The Jackson Laboratory