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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5541617
Gene symbol: Scnn1b
Gene name: sodium channel, nonvoltage-gated 1 beta
Probe: RIKEN clone E030024A13 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:9942: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Present Regionally restricted GUDMAP:9942
TS17: mesonephros Present Regionally restricted GUDMAP:9942
TS17: mesonephric tubule Present Regionally restricted GUDMAP:9942
TS17: cranial mesonephric tubule Present GUDMAP:9942
TS17: rest of cranial mesonephric tubule Present GUDMAP:9942
TS17: nephric duct, mesonephric portion Present Regionally restricted GUDMAP:9942
TS17: nephric duct, metanephric portion Absent GUDMAP:9942
TS17: mesonephros mesenchyme Absent GUDMAP:9942
TS17: metanephric mesenchyme Absent GUDMAP:9942
TS17: genitourinary system mesenchyme Ambiguous GUDMAP:9942 expression uncertain

Specimen GUDMAP:9943: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: male reproductive system Present Regionally restricted GUDMAP:9943
TS21: mesonephros of male Present Regionally restricted GUDMAP:9943
TS21: mesonephric tubule of male Present Regionally restricted GUDMAP:9943
TS21: nephric duct of male, mesonephric portion Absent GUDMAP:9943
TS21: paramesonephric duct of male, mesonephric portion Absent GUDMAP:9943
TS21: coelomic epithelium of male mesonephros Absent GUDMAP:9943
TS21: nephric duct of male, rest of Absent GUDMAP:9943
TS21: paramesonephric duct of male, rest of Absent GUDMAP:9943
TS21: mesonephric mesenchyme of male Ambiguous GUDMAP:9943 possible expression
TS21: testis Ambiguous GUDMAP:9943 expression uncertain

Specimen GUDMAP:9944: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the male is shown. Annotators reported the male expression pattern in the metanephros is identical to female.
Structure Level Pattern Image Note
TS21: urinary system Present GUDMAP:9944
TS21: metanephros Present Regionally restricted GUDMAP:9944
TS21: ureter Present GUDMAP:9944
TS21: urogenital mesentery Absent GUDMAP:9944
TS21: cap mesenchyme Absent GUDMAP:9944
TS21: ureteric trunk Ambiguous GUDMAP:9944 expression uncertain

Specimen GUDMAP:9945: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: female reproductive system Present GUDMAP:9945
TS21: mesonephros of female Present Regionally restricted GUDMAP:9945
TS21: mesonephric tubule of female Present GUDMAP:9945
TS21: paramesonephric duct of female, mesonephric portion Absent GUDMAP:9945
TS21: coelomic epithelium of female mesonephros Absent GUDMAP:9945
TS21: paramesonephric duct of female, rest of Absent GUDMAP:9945
TS21: nephric duct of female, mesonephric portion Ambiguous GUDMAP:9945 expression possible
TS21: mesonephric mesenchyme of female Ambiguous GUDMAP:9945 possible weak expression
TS21: ovary Ambiguous GUDMAP:9945 expression uncertain

Specimen GUDMAP:9946: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: urinary system Present GUDMAP:9946
TS21: ureter Present GUDMAP:9946
TS21: urogenital sinus Present Regionally restricted GUDMAP:9946
TS21: primitive bladder Ambiguous GUDMAP:9946 expression uncertain

Specimen GUDMAP:11303: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: urinary system Present Regionally restricted GUDMAP:11303
TS23: metanephros Present Regionally restricted GUDMAP:11303
TS23: renal cortex Present GUDMAP:11303
TS23: cortical renal tubule Present Regionally restricted GUDMAP:11303
TS23: cortical early distal tubule Present GUDMAP:11303 expression strongest in early distal tubule
TS23: cortical collecting duct Present Regionally restricted GUDMAP:11303 expression only detected in a subset of cortical collecting ducts.
TS23: renal medulla Present GUDMAP:11303
TS23: medullary collecting duct Present GUDMAP:11303 strong expression detected in medullary collecting duct.
TS23: collecting duct Present GUDMAP:11303
TS23: developing capillary loop stage nephron group Present GUDMAP:11303
TS23: renal pelvis Present GUDMAP:11303
TS23: pelvic urothelial lining Present GUDMAP:11303
TS23: nephrogenic zone Absent GUDMAP:11303
TS23: cortical early proximal tubule Absent GUDMAP:11303
TS23: anlage of loop of Henle of cortical renal tubule Absent GUDMAP:11303
TS23: renal vesicle Absent GUDMAP:11303
TS23: comma-shaped body Absent GUDMAP:11303
TS23: s-shaped body Absent GUDMAP:11303
TS23: renal connecting tubule of s-shaped body Absent GUDMAP:11303
TS23: capillary loop renal corpuscle Absent GUDMAP:11303
TS23: maturing renal corpuscle Absent GUDMAP:11303
TS23: renal connecting tubule Absent GUDMAP:11303
TS23: renal cortical interstitium Absent GUDMAP:11303
TS23: renal cortical vasculature Absent GUDMAP:11303
TS23: immature loop of Henle Absent GUDMAP:11303
TS23: renal medullary interstitium Absent GUDMAP:11303
TS23: renal medullary vasculature Absent GUDMAP:11303
TS23: pelvic smooth muscle Absent GUDMAP:11303
TS23: perihilar interstitium Absent GUDMAP:11303
TS23: maturing nephron Absent GUDMAP:11303
TS23: renal interstitium Absent GUDMAP:11303
TS23: renal vasculature Absent GUDMAP:11303
TS23: early nephron Absent GUDMAP:11303
TS23: renal connecting segment of renal vesicle Absent GUDMAP:11303
TS23: renal connecting segment of comma-shaped body Absent GUDMAP:11303
TS23: cortical renal tubule of capillary loop nephron group Absent GUDMAP:11303
TS23: early proximal tubule of capillary loop nephron Absent GUDMAP:11303

Specimen GUDMAP:11304: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: ureter Absent GUDMAP:11304


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/16/2024
MGI 6.23
The Jackson Laboratory