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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5540852
Gene symbol: Col9a1
Gene name: collagen, type IX, alpha 1
Probe: RIKEN clone 1110031E13 subclone 1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:7149: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: metanephros Present GUDMAP:7149
TS23: renal cortex Present GUDMAP:7149
TS23: renal cortical interstitium Present GUDMAP:7149
TS23: renal medulla Present GUDMAP:7149
TS23: renal medullary interstitium Present GUDMAP:7149
TS23: renal pelvis Present GUDMAP:7149
TS23: pelvic smooth muscle Present GUDMAP:7149
TS23: perihilar interstitium Present GUDMAP:7149
TS23: nephrogenic zone Present GUDMAP:7149
TS23: nephrogenic interstitium Present GUDMAP:7149

Specimen GUDMAP:7454: embryonic day 12.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: urogenital mesentery Present GUDMAP:7454
TS20: renal interstitium Present GUDMAP:7454

Specimen GUDMAP:9962: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Present GUDMAP:9962
TS17: genitourinary system mesenchyme Present GUDMAP:9962
TS17: mesonephros Present Regionally restricted GUDMAP:9962
TS17: mesonephric tubule Present GUDMAP:9962
TS17: nephric duct, mesonephric portion Absent GUDMAP:9962
TS17: metanephric mesenchyme Ambiguous GUDMAP:9962 expression possible
TS17: nephric duct, metanephric portion Ambiguous GUDMAP:9962 expression possible, but could be a false expression caused by the trapping inside the ureteric bud

Specimen GUDMAP:9963: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: male reproductive system Present GUDMAP:9963
TS21: mesonephros of male Present Regionally restricted GUDMAP:9963
TS21: mesonephric mesenchyme of male Present GUDMAP:9963
TS21: testis Present Regionally restricted GUDMAP:9963
TS21: interstitium of the testis Present GUDMAP:9963 weak expression
TS21: mesonephric tubule of male Absent GUDMAP:9963
TS21: nephric duct of male, rest of Absent GUDMAP:9963
TS21: paramesonephric duct of male, rest of Absent GUDMAP:9963
TS21: primary sex cord Absent GUDMAP:9963
TS21: nephric duct of male, mesonephric portion Ambiguous GUDMAP:9963 expression uncertain
TS21: paramesonephric duct of male, mesonephric portion Ambiguous GUDMAP:9963 expression uncertain

Specimen GUDMAP:9964: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: urinary system Present GUDMAP:9964
TS21: urogenital sinus Present Regionally restricted GUDMAP:9964
TS21: primitive bladder Present GUDMAP:9964
TS21: ureter Ambiguous GUDMAP:9964 expression uncertain

Specimen GUDMAP:9965: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: female reproductive system Present GUDMAP:9965
TS21: mesonephros of female Present Regionally restricted GUDMAP:9965
TS21: mesonephric mesenchyme of female Present GUDMAP:9965
TS21: paramesonephric duct of female, mesonephric portion Present GUDMAP:9965 weak expression most likely to be the mesenchyme surrounding the duct
TS21: mesonephric tubule of female Absent GUDMAP:9965
TS21: ovary Absent GUDMAP:9965
TS21: nephric duct of female, mesonephric portion Ambiguous GUDMAP:9965 expression uncertain

Specimen GUDMAP:9966: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the female is shown. Annotators reported the male expression pattern in the metanephros is identical to female.
Structure Level Pattern Image Note
TS21: urinary system Present GUDMAP:9966
TS21: urogenital mesentery Present GUDMAP:9966
TS21: metanephros Present Regionally restricted GUDMAP:9966
TS21: renal interstitium Present GUDMAP:9966
TS21: cap mesenchyme Absent GUDMAP:9966
TS21: ureteric tip Absent GUDMAP:9966
TS21: ureter Ambiguous GUDMAP:9966 expression uncertain


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/30/2024
MGI 6.23
The Jackson Laboratory