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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5540752
Gene symbol: S1pr3
Gene name: sphingosine-1-phosphate receptor 3
Probe: RIKEN clone D430018B13 subclone 1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:8913: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Present Regionally restricted GUDMAP:8913
TS17: genitourinary system mesenchyme Present GUDMAP:8913
TS17: mesonephros Present Regionally restricted GUDMAP:8913
TS17: mesonephros mesenchyme Present GUDMAP:8913
TS17: nephric duct, metanephric portion Absent GUDMAP:8913
TS17: mesonephric tubule Absent GUDMAP:8913
TS17: nephric duct Ambiguous GUDMAP:8913
TS17: nephric duct, mesonephric portion Ambiguous GUDMAP:8913 signal likely to be absent
TS17: metanephric mesenchyme Ambiguous GUDMAP:8913 signal likely to be absent
Specimen GUDMAP:8914: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: male reproductive system Present Regionally restricted GUDMAP:8914
TS21: mesonephros of male Present Regionally restricted GUDMAP:8914
TS21: mesonephric mesenchyme of male Present Regionally restricted GUDMAP:8914 medial expression
TS21: testis Present Regionally restricted GUDMAP:8914
TS21: interstitium of the testis Present GUDMAP:8914
TS21: mesonephric tubule of male Absent GUDMAP:8914
TS21: nephric duct of male, mesonephric portion Absent GUDMAP:8914
TS21: paramesonephric duct of male, mesonephric portion Absent GUDMAP:8914
TS21: coelomic epithelium of male mesonephros Absent GUDMAP:8914
TS21: epithelium of nephric duct of male Absent GUDMAP:8914
TS21: epithelium of rest of paramesonephric duct of male Absent GUDMAP:8914
TS21: coelomic epithelium of testis Absent GUDMAP:8914
TS21: primary sex cord Absent GUDMAP:8914
TS21: nephric duct of male, rest of Ambiguous GUDMAP:8914 possible signal in the mesenchyme
TS21: mesenchyme of nephric duct of male Ambiguous GUDMAP:8914
TS21: paramesonephric duct of male, rest of Ambiguous GUDMAP:8914 possible signal in the mesenchyme
TS21: mesenchyme of rest of paramesonephric duct of male Ambiguous GUDMAP:8914
Specimen GUDMAP:8915: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the male is shown. Annotators reported the male expression pattern in the metanephros is identical to female.
Structure Level Pattern Image Note
TS21: urinary system Present Regionally restricted GUDMAP:8915
TS21: metanephros Present Regionally restricted GUDMAP:8915
TS21: renal pelvis Present GUDMAP:8915
TS21: ureter Present GUDMAP:8915
TS21: ureteric tip Absent GUDMAP:8915
TS21: renal capsule Ambiguous GUDMAP:8915 possible signal
TS21: nephrogenic zone Ambiguous GUDMAP:8915
TS21: nephrogenic interstitium Ambiguous GUDMAP:8915
TS21: cap mesenchyme Ambiguous GUDMAP:8915 signal may extend into a portion of the cap mesenchyme
TS21: pretubular aggregate Ambiguous GUDMAP:8915
TS21: early nephron Ambiguous GUDMAP:8915
TS21: renal interstitium Present GUDMAP:8915
Specimen GUDMAP:8916: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: female reproductive system Present Regionally restricted GUDMAP:8916
TS21: mesonephros of female Present Regionally restricted GUDMAP:8916
TS21: mesonephric mesenchyme of female Present Regionally restricted GUDMAP:8916 medial expression; regional expression pattern in the medial portion adjacent to ovary and surrounding caudal nephric and paramesonephric rest of ducts and a restricted region adjacent to the rostral tip of the paramesonephric duct ostium
TS21: mesonephric tubule of female Absent GUDMAP:8916
TS21: nephric duct of female, mesonephric portion Absent GUDMAP:8916
TS21: paramesonephric duct of female, mesonephric portion Absent GUDMAP:8916 signal appears restricted to the mesenchyme adjacent to the rostral tip of the duct (ostium)
TS21: coelomic epithelium of female mesonephros Absent GUDMAP:8916
TS21: epithelium of nephric duct of female Absent GUDMAP:8916
TS21: epithelium of rest of paramesonephric duct of female Absent GUDMAP:8916
TS21: ovary Absent GUDMAP:8916
TS21: nephric duct of female, rest of Ambiguous GUDMAP:8916 possible signal in the mesenchyme
TS21: mesenchyme of nephric duct of female Ambiguous GUDMAP:8916
TS21: paramesonephric duct of female, rest of Ambiguous GUDMAP:8916 possible signal in the mesenchyme
TS21: mesenchyme of rest of paramesonephric duct of female Ambiguous GUDMAP:8916
Specimen GUDMAP:9900: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: urinary system Present GUDMAP:9900
TS23: metanephros Present Regionally restricted GUDMAP:9900
TS23: renal cortex Present Regionally restricted GUDMAP:9900
TS23: cortical renal tubule Present Regionally restricted GUDMAP:9900 expression in subset of cortical renal tubules but difficult to distinguish between types.
TS23: renal cortical interstitium Present GUDMAP:9900
TS23: renal medulla Present Regionally restricted GUDMAP:9900
TS23: renal medullary interstitium Present GUDMAP:9900
TS23: immature loop of Henle Present Regionally restricted GUDMAP:9900 regional expression detected in immature loop of Henle tubules close to the renal cortex; no expression was detected in immature loop of Henle tubules deep in the renal medulla
TS23: renal pelvis Present Regionally restricted GUDMAP:9900
TS23: pelvic smooth muscle Present GUDMAP:9900 weak expression in pelvic smooth muscle and perihilar interstitium.
TS23: perihilar interstitium Present GUDMAP:9900
TS23: developing capillary loop stage nephron group Present GUDMAP:9900
TS23: maturing nephron Present GUDMAP:9900
TS23: renal interstitium Present GUDMAP:9900
TS23: late tubule Present GUDMAP:9900
TS23: nephrogenic zone Absent GUDMAP:9900
TS23: renal vesicle Absent GUDMAP:9900
TS23: comma-shaped body Absent GUDMAP:9900
TS23: s-shaped body Absent GUDMAP:9900
TS23: capillary loop renal corpuscle Absent GUDMAP:9900
TS23: maturing renal corpuscle Absent GUDMAP:9900
TS23: renal connecting tubule Absent GUDMAP:9900
TS23: cortical collecting duct Absent GUDMAP:9900
TS23: renal cortical vasculature Absent GUDMAP:9900
TS23: renal medullary vasculature Absent GUDMAP:9900
TS23: medullary collecting duct Absent GUDMAP:9900
TS23: pelvic urothelial lining Absent GUDMAP:9900
TS23: collecting duct Absent GUDMAP:9900
TS23: renal vasculature Absent GUDMAP:9900
TS23: early nephron Absent GUDMAP:9900
TS23: nephrogenic interstitium Ambiguous GUDMAP:9900 possible regional expression in the nephrogenic interstitium closest to the renal cortex.
TS23: cortical renal tubule of capillary loop nephron group Present GUDMAP:9900
TS23: cortical renal tubule of maturing nephron group Present GUDMAP:9900
Specimen GUDMAP:9901: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: ureter Present Regionally restricted GUDMAP:9901
TS23: ureteral mesenchyme Present GUDMAP:9901
TS23: ureteral smooth muscle layer Present GUDMAP:9901
TS23: ureteral mesenchyme outer layer Present GUDMAP:9901
TS23: urothelium of ureter Absent GUDMAP:9901
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/18/2025
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