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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5538951
Gene symbol: Col9a1
Gene name: collagen, type IX, alpha 1
Probe: RIKEN clone 1110031E13
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:6983: postnatal adult (more )
Note: Labeling was visualized using NBT/BCIP. Annotators reported some non-specific nuclear staining.
Structure Level Pattern Image Note
TS28: bladder Ambiguous GUDMAP:6983 there may be spotted expression in the layers of the bladder beneath the epithelial layer.
TS28: urothelium of bladder Ambiguous GUDMAP:6983
Specimen GUDMAP:7006: postnatal adult (more )
Note: Labeling was visualized using NBT/BCIP. Annotators reported some non-specific speckled staining.
Structure Level Pattern Image Note
TS28: testis Absent GUDMAP:7006
Specimen GUDMAP:7490: embryonic day 10.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS17: genitourinary system Present GUDMAP:7490
TS17: genitourinary system mesenchyme Present GUDMAP:7490
TS17: mesonephros Absent GUDMAP:7490
TS17: metanephric mesenchyme Absent GUDMAP:7490
Specimen GUDMAP:7491: embryonic day 12.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS20: female reproductive system Present GUDMAP:7491
TS20: mesonephros of female Present Regionally restricted GUDMAP:7491
TS20: mesonephric mesenchyme of female Present GUDMAP:7491 signal appears strongest in the rostral mesonephros where the mesenchyme is thickest and appears weaker surrounding the paramesonephric duct
TS20: ovary Absent GUDMAP:7491
TS20: paramesonephric duct of female, mesonephric portion Absent GUDMAP:7491
Specimen GUDMAP:7492: embryonic day 12.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS20: male reproductive system Present GUDMAP:7492
TS20: mesonephros of male Present Regionally restricted GUDMAP:7492
TS20: mesonephric mesenchyme of male Present GUDMAP:7492 signal appears strongest in the rostral mesonephros where the mesenchyme is thickest and appears weaker surrounding the paramesonephric duct
TS20: testis Absent GUDMAP:7492 the staining seen in the testis is most likely background
TS20: paramesonephric duct of male, mesonephric portion Absent GUDMAP:7492
Specimen GUDMAP:7493: embryonic day 12.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS20: urinary system Present GUDMAP:7493
TS20: metanephros Present Regionally restricted GUDMAP:7493
TS20: renal interstitium Present GUDMAP:7493
TS20: urogenital mesentery Present GUDMAP:7493
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/30/2024
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