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Gene Expression Data
Assay Details
Assay
Reference: J:84751 Blackshear PJ, et al., Graded phenotypic response to partial and complete deficiency of a brain-specific transcript variant of the winged helix transcription factor RFX4. Development. 2003 Oct;130(19):4539-52
Assay type: RNA in situ
MGI Accession ID: MGI:5436095
Gene symbol: Rfx4
Gene name: regulatory factor X, 4 (influences HLA class II expression)
Probe: IMAGE clone 763537
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 8A: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: future brain Present Regionally restricted 8A Expression is present in most of the neural plate.
TS13: future prosencephalon Absent 8A Expression is excluded from the future forebrain.

Specimen 8B: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: future brain Present Regionally restricted 8B Expression is present in most of the neural plate.
TS13: future prosencephalon Absent 8B Expression is excluded from the future forebrain.

Specimen 8C: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: diencephalon Present Regionally restricted 8C Expression is present in the caudal diencephalon. The rostral limit of expression approximates the zona limitans.
TS15: future midbrain Present 8C
TS15: future spinal cord Present 8C
TS15: telencephalon Present Regionally restricted 8C Expression is in the caudodorsal telencephalon.

Specimen 8C': embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: telencephalon roof plate Present 8C' Expression is present in the dorsal telencephalon.

Specimen 8D: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: central nervous system Present Widespread 8D Expression extends throughout the neural tube.

Specimen 8E: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: central nervous system Present Widespread 8E Expression extends throughout the neural tube.

Specimen 8F: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: central nervous system Present Widespread 8F Expression extends throughout the neural tube.
TS17: telencephalon Present Regionally restricted 8F Expression in the telencephalon is limited to the cerebral cortex; expression in the telencephalic dorsal midline is not detectable.

Specimen 8G: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: telencephalon Present Regionally restricted 8G Expression in the telencephalon is limited to the cerebral cortex; expression in the telencephalic dorsal midline is not detectable.

Specimen 8H: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: telencephalon Present Regionally restricted 8H Expression in the telencephalon is limited to the cerebral cortex; expression in the telencephalic dorsal midline is not detectable.
TS17: optic stalk Present Regionally restricted 8H Expression is present in the lateral optic stalk.

Specimen 8I: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: acoustic ganglion Present 8I
TS17: facial ganglion Present 8I
TS17: trigeminal ganglion Present 8I

Specimen 8J: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: brain Present 8J Expression is present in the neuroepithelium of most of the neural tube.

Specimen 8K: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: brain Present 8K Expression is present in the neuroepithelium of most of the neural tube.
TS20: cerebral cortex Present Graded 8K Expression is present in a dorsal-to-ventral gradient.
TS20: optic stalk Present Regionally restricted 8K Expression is present in the medial optic stalk.

Specimen 8L: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: brain Present 8L Expression is present in the neuroepithelium of most of the neural tube.
TS20: epithalamus Absent 8L The majority of roofplate derivates show no expression, including the epiphysis.
TS20: choroid plexus Absent 8L The majority of roofplate derivates show no expression, including the choroid plexus of the lateral and fourth ventricles.

Specimen 8M: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: brain Present 8M Expression is present in the neuroepithelium of most of the neural tube.
TS20: 4th ventricle choroid plexus Absent 8M The majority of roofplate derivates show no expression, including the choroid plexus of the fourth ventricle.

Specimen 9A: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: brain Present 9A Expression is present in the neuroepithelium of most of the neural tube.

Specimen 9B: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: brain Present 9B Expression is present in the neuroepithelium of most of the neural tube.
TS24: adenohypophysis Present 9B Expression is present in the anterior pituitary.

Specimen 9C: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: brain Present 9C Expression is present in the neuroepithelium of most of the neural tube.
TS24: tectum Strong Regionally restricted 9C , 9F Expression is found in the region of the developing subcommissural organ.

Specimen 9D: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: brain Present 9D Expression is present in the neuroepithelium of most of the neural tube.

Specimen 9E: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: tectum Strong Regionally restricted 9E Expression is found in the region of the developing subcommissural organ.

Specimen 9G: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: subcommissural organ Strong 9G Expression is found in the region of the developing subcommissural organ.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/21/2024
MGI 6.23
The Jackson Laboratory