Gene Expression Data
Assay Details
Assay
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Reference:
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J:84751
Blackshear PJ, et al., Graded phenotypic response to partial and complete deficiency of a brain-specific transcript variant of the winged helix transcription factor RFX4. Development. 2003 Oct;130(19):4539-52
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:5436095
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Gene symbol:
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Rfx4
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Gene name:
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regulatory factor X, 4 (influences HLA class II expression)
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Results
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Specimen
8A:
embryonic day 8.5
(more )
Specimen
8A:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 8.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Specimen
8B:
embryonic day 8.5
(more )
Specimen
8B:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 8.5
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Sex:
|
Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Specimen
8C:
embryonic day 9.5
(more )
Specimen
8C:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 9.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Specimen
8C':
embryonic day 9.5
(more )
Specimen
8C':
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 9.5
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Sex:
|
Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Cryosection
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Specimen
8D:
embryonic day 10.5
(more )
Specimen
8D:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 10.5
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Sex:
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Not Specified
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Type:
|
whole mount
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Fixation:
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4% Paraformaldehyde
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Specimen
8E:
embryonic day 10.5
(more )
Specimen
8E:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 10.5
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Sex:
|
Not Specified
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Type:
|
whole mount
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Fixation:
|
4% Paraformaldehyde
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Specimen
8F:
embryonic day 10.5
(more )
Specimen
8F:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 10.5
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Sex:
|
Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Cryosection
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Structure |
Level |
Pattern |
Image |
Note |
TS17: central nervous system |
Present |
Widespread |
8F
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Expression extends throughout the neural tube.
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TS17: telencephalon |
Present |
Regionally restricted |
8F
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Expression in the telencephalon is limited to the cerebral cortex; expression in the telencephalic dorsal midline is not detectable.
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Specimen
8G:
embryonic day 10.5
(more )
Specimen
8G:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 10.5
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Sex:
|
Not Specified
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Type:
|
section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Cryosection
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Structure |
Level |
Pattern |
Image |
Note |
TS17: telencephalon |
Present |
Regionally restricted |
8G
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Expression in the telencephalon is limited to the cerebral cortex; expression in the telencephalic dorsal midline is not detectable.
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Specimen
8H:
embryonic day 10.5
(more )
Specimen
8H:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 10.5
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Sex:
|
Not Specified
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Type:
|
section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: telencephalon |
Present |
Regionally restricted |
8H
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Expression in the telencephalon is limited to the cerebral cortex; expression in the telencephalic dorsal midline is not detectable.
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TS17: optic stalk |
Present |
Regionally restricted |
8H
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Expression is present in the lateral optic stalk.
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Specimen
8I:
embryonic day 10.5
(more )
Specimen
8I:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 10.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Cryosection
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Specimen
8J:
embryonic day 12.5
(more )
Specimen
8J:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Cryosection
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Structure |
Level |
Pattern |
Image |
Note |
TS20: brain |
Present |
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8J
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Expression is present in the neuroepithelium of most of the neural tube.
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Specimen
8K:
embryonic day 12.5
(more )
Specimen
8K:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Cryosection
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Structure |
Level |
Pattern |
Image |
Note |
TS20: brain |
Present |
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8K
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Expression is present in the neuroepithelium of most of the neural tube.
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TS20: cerebral cortex |
Present |
Graded |
8K
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Expression is present in a dorsal-to-ventral gradient.
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TS20: optic stalk |
Present |
Regionally restricted |
8K
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Expression is present in the medial optic stalk.
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Specimen
8L:
embryonic day 12.5
(more )
Specimen
8L:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: brain |
Present |
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8L
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Expression is present in the neuroepithelium of most of the neural tube.
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TS20: epithalamus |
Absent |
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8L
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The majority of roofplate derivates show no expression, including the epiphysis.
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TS20: choroid plexus |
Absent |
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8L
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The majority of roofplate derivates show no expression, including the choroid plexus of the lateral and fourth ventricles.
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Specimen
8M:
embryonic day 12.5
(more )
Specimen
8M:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: brain |
Present |
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8M
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Expression is present in the neuroepithelium of most of the neural tube.
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TS20: 4th ventricle choroid plexus |
Absent |
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8M
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The majority of roofplate derivates show no expression, including the choroid plexus of the fourth ventricle.
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Specimen
9A:
embryonic day 16.5
(more )
Specimen
9A:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 16.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Cryosection
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Structure |
Level |
Pattern |
Image |
Note |
TS24: brain |
Present |
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9A
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Expression is present in the neuroepithelium of most of the neural tube.
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Specimen
9B:
embryonic day 16.5
(more )
Specimen
9B:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 16.5
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Sex:
|
Not Specified
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Type:
|
section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: brain |
Present |
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9B
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Expression is present in the neuroepithelium of most of the neural tube.
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TS24: adenohypophysis |
Present |
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9B
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Expression is present in the anterior pituitary.
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Specimen
9C:
embryonic day 16.5
(more )
Specimen
9C:
(close )
Genetic Background:
|
Not Specified
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Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
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Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: brain |
Present |
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9C
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Expression is present in the neuroepithelium of most of the neural tube.
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TS24: tectum |
Strong |
Regionally restricted |
9C
,
9F
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Expression is found in the region of the developing subcommissural organ.
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Specimen
9D:
embryonic day 16.5
(more )
Specimen
9D:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 16.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: brain |
Present |
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9D
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Expression is present in the neuroepithelium of most of the neural tube.
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Specimen
9E:
embryonic day 14.5
(more )
Specimen
9E:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 14.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Cryosection
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Structure |
Level |
Pattern |
Image |
Note |
TS22: tectum |
Strong |
Regionally restricted |
9E
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Expression is found in the region of the developing subcommissural organ.
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Specimen
9G:
postnatal day 0
(more )
Specimen
9G:
(close )
Genetic Background:
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Not Specified
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Age:
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postnatal day 0
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Sex:
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Not Specified
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Type:
|
section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: subcommissural organ |
Strong |
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9G
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Expression is found in the region of the developing subcommissural organ.
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