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Ighv4-2 Pseudogene Detail
Summary
  • Symbol
    Ighv4-2
  • Name
    immunoglobulin heavy variable V4-2
  • Feature Type
    pseudogenic gene segment
  • IDs
    MGI:5009840
    NCBI Gene: 668423
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr12:113976764-113977059 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 62.26 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    103 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5009840
 pseudogenic gene segment Chr12:113976764-113977226 (-)
129S1/SvImJ MGP_129S1SvImJ_G0000207
 pseudogenic gene segment Chr12:116601907-116602368 (-)
A/J MGP_AJ_G0000183
 pseudogenic gene segment Chr12:112071371-112072778 (-)
AKR/J MGP_AKRJ_G0000182
 pseudogenic gene segment Chr12:115506632-115507095 (-)
BALB/cJ MGP_BALBcJ_G0000182
 pseudogenic gene segment Chr12:112486741-112585169 (-)
C3H/HeJ MGP_C3HHeJ_G0000176
 pseudogenic gene segment Chr12:115864056-115864519 (-)
C57BL/6NJ MGP_C57BL6NJ_G0000262
 pseudogenic gene segment Chr12:120148886-120223994 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0000171
 pseudogenic gene segment Chr12:124776849-124777312 (-)
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0000181
 pseudogenic gene segment Chr12:128016618-128017080 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000254
 pseudogenic gene segment Chr12:114847621-114848084 (-)
PWK/PhJ MGP_PWKPhJ_G0000147
 pseudogenic gene segment Chr12:106359760-106360222 (-)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    106
  • RefSeq
    1
  • UniProt
    28
Representative SequencesLengthStrain/SpeciesFlank
genomic 668423 NCBI Gene Model | MGI Sequence Detail 296 C57BL/6J ±  kb
transcript OQ570981 GenBank | ENA | DDBJ | MGI Sequence Detail 375 000664*  
polypeptide X5J5A9 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
References
more
  • Summaries
    All 12
  • Earliest
    J:10610 Bonilla FA, et al., V kappa gene usage, idiotype expression, and antigen binding among clones expressing the VHX24 gene family derived from naive and anti-idiotype immune BALB/c mice. J Immunol. 1990 Jul 15;145(2):616-22
  • Latest
    J:250678 Tas JM, et al., Visualizing antibody affinity maturation in germinal centers. Science. 2016 Mar 4;351(6277):1048-54
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory