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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4829356
Gene symbol: Zim1
Gene name: zinc finger, imprinted 1
Probe: MGC clone 76686
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004601_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004601_02
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004601_02
Specimen euxassay_004601_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004601_03
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004601_03
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004601_03
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_004601_03
Specimen euxassay_004601_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004601_04
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004601_04
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004601_04
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004601_04
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_004601_04
Specimen euxassay_004601_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004601_05
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004601_05
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004601_05
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_004601_05
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004601_05
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_004601_05
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_004601_05
Specimen euxassay_004601_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004601_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_004601_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004601_06
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004601_06
TS23: forelimb digit 4 mesenchyme Moderate Regionally restricted euxassay_004601_06
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_004601_06
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004601_06
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_004601_06
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_004601_06
Specimen euxassay_004601_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004601_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_004601_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004601_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004601_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004601_07
TS23: ventral grey horn Moderate Regionally restricted euxassay_004601_07
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_004601_07
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004601_07
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_004601_07
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_004601_07
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_004601_07
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_004601_07
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_004601_07
TS23: forelimb digit 3 mesenchyme Moderate Regionally restricted euxassay_004601_07
TS23: forelimb digit 2 mesenchyme Moderate Regionally restricted euxassay_004601_07
TS23: forelimb digit 4 mesenchyme Moderate Regionally restricted euxassay_004601_07
Specimen euxassay_004601_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_004601_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004601_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004601_08
TS23: ventral grey horn Moderate Regionally restricted euxassay_004601_08
TS23: submandibular gland primordium Strong Regionally restricted euxassay_004601_08
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004601_08
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_004601_08
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004601_08
Specimen euxassay_004601_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_004601_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004601_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004601_09
TS23: ventral grey horn Moderate Regionally restricted euxassay_004601_09
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_004601_09 facial motor nucleus
TS23: submandibular gland primordium Strong Regionally restricted euxassay_004601_09
Specimen euxassay_004601_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_004601_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004601_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004601_10
TS23: ventral grey horn Moderate Regionally restricted euxassay_004601_10
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_004601_10
Specimen euxassay_004601_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004601_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004601_11
TS23: ventral grey horn Moderate Regionally restricted euxassay_004601_11
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_004601_11 facial motor nucleus
Specimen euxassay_004601_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004601_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004601_12
TS23: ventral grey horn Moderate Regionally restricted euxassay_004601_12
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_004601_12 facial motor nucleus
Specimen euxassay_004601_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_004601_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004601_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004601_13
TS23: ventral grey horn Weak Regionally restricted euxassay_004601_13
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_004601_13 facial motor nucleus
Specimen euxassay_004601_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_004601_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004601_14
TS23: ventral grey horn Moderate Regionally restricted euxassay_004601_14
Specimen euxassay_004601_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_004601_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004601_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004601_15
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_004601_15 facial motor nucleus
Specimen euxassay_004601_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_004601_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004601_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004601_16
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_004601_16
Specimen euxassay_004601_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004601_17
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_004601_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004601_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004601_17
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_004601_17
Specimen euxassay_004601_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004601_18
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_004601_18
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_004601_18
Specimen euxassay_004601_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004601_19
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_004601_19
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_004601_19
Specimen euxassay_004601_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004601_20
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_004601_20
Specimen euxassay_004601_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004601_21
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004601_21
Specimen euxassay_004601_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_004601_22
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004601_22
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_004601_22
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_004601_22
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_004601_22
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_004601_22
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_004601_22
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_004601_22
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004601_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/18/2025
MGI 6.24 		The Jackson Laboratory