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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4829123
Gene symbol: Usf1
Gene name: upstream transcription factor 1
Probe: T30439
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_012287_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_012287_01
TS23: forebrain Weak Uniform euxassay_012287_01
Specimen euxassay_012287_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012287_02
TS23: forebrain Weak Uniform euxassay_012287_02
Specimen euxassay_012287_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012287_03
TS23: forebrain Weak Uniform euxassay_012287_03
TS23: hindbrain Weak Uniform euxassay_012287_03
Specimen euxassay_012287_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012287_04
TS23: hindbrain Weak Uniform euxassay_012287_04
TS23: forebrain Weak Uniform euxassay_012287_04
TS23: upper jaw molar Weak Regionally restricted euxassay_012287_04
TS23: lower jaw molar Weak Regionally restricted euxassay_012287_04
Specimen euxassay_012287_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012287_05
TS23: facial ganglion Moderate Regionally restricted euxassay_012287_05
TS23: hindbrain Weak Uniform euxassay_012287_05
TS23: forebrain Weak Uniform euxassay_012287_05
TS23: upper jaw molar Weak Regionally restricted euxassay_012287_05
TS23: lower jaw molar Weak Regionally restricted euxassay_012287_05
Specimen euxassay_012287_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012287_06
TS23: hindbrain Weak Uniform euxassay_012287_06
TS23: forebrain Weak Uniform euxassay_012287_06
TS23: testis Weak Regionally restricted euxassay_012287_06
Specimen euxassay_012287_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012287_07
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_012287_07
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_012287_07
TS23: trigeminal nerve Weak Regionally restricted euxassay_012287_07
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012287_07
TS23: hindbrain Weak Uniform euxassay_012287_07
TS23: forebrain Weak Uniform euxassay_012287_07
TS23: midbrain Weak Uniform euxassay_012287_07
TS23: renal cortex Weak Regionally restricted euxassay_012287_07
TS23: testis Moderate Regionally restricted euxassay_012287_07
Specimen euxassay_012287_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_012287_08
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_012287_08
TS23: submandibular gland primordium Weak Regionally restricted euxassay_012287_08
TS23: hindbrain Weak Uniform euxassay_012287_08
TS23: forebrain Weak Uniform euxassay_012287_08
TS23: midbrain Weak Uniform euxassay_012287_08
TS23: renal cortex Weak Regionally restricted euxassay_012287_08
TS23: testis Weak Regionally restricted euxassay_012287_08
TS23: upper jaw incisor Weak Regionally restricted euxassay_012287_08
Specimen euxassay_012287_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: submandibular gland primordium Weak Regionally restricted euxassay_012287_09
TS23: midbrain Weak Uniform euxassay_012287_09
TS23: hindbrain Weak Uniform euxassay_012287_09
TS23: forebrain Weak Uniform euxassay_012287_09
TS23: renal cortex Weak Regionally restricted euxassay_012287_09
TS23: lower jaw incisor Weak Regionally restricted euxassay_012287_09
Specimen euxassay_012287_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012287_10
TS23: midbrain Weak Uniform euxassay_012287_10
TS23: hindbrain Weak Uniform euxassay_012287_10
TS23: forebrain Weak Uniform euxassay_012287_10
TS23: renal cortex Weak Regionally restricted euxassay_012287_10
Specimen euxassay_012287_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012287_11
TS23: midbrain Weak Uniform euxassay_012287_11
TS23: hindbrain Weak Uniform euxassay_012287_11
TS23: forebrain Weak Uniform euxassay_012287_11
TS23: spinal cord Weak Uniform euxassay_012287_11
Specimen euxassay_012287_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord Weak Uniform euxassay_012287_12
TS23: midbrain Weak Uniform euxassay_012287_12
TS23: hindbrain Weak Uniform euxassay_012287_12
TS23: forebrain Weak Uniform euxassay_012287_12
TS23: lower jaw incisor Weak Regionally restricted euxassay_012287_12
TS23: upper jaw incisor Weak Regionally restricted euxassay_012287_12
Specimen euxassay_012287_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord Weak Uniform euxassay_012287_13
TS23: midbrain Weak Uniform euxassay_012287_13
TS23: hindbrain Weak Uniform euxassay_012287_13
TS23: forebrain Weak Uniform euxassay_012287_13
TS23: lower jaw incisor Weak Regionally restricted euxassay_012287_13
Specimen euxassay_012287_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord Weak Uniform euxassay_012287_14
TS23: midbrain Weak Uniform euxassay_012287_14
TS23: hindbrain Weak Uniform euxassay_012287_14
TS23: forebrain Weak Uniform euxassay_012287_14
Specimen euxassay_012287_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012287_15
TS23: trigeminal nerve Weak Regionally restricted euxassay_012287_15
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012287_15
TS23: spinal cord Weak Uniform euxassay_012287_15
TS23: midbrain Weak Uniform euxassay_012287_15
TS23: hindbrain Weak Uniform euxassay_012287_15
TS23: forebrain Weak Uniform euxassay_012287_15
TS23: renal cortex Weak Regionally restricted euxassay_012287_15
Specimen euxassay_012287_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_012287_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012287_16
TS23: submandibular gland primordium Weak Regionally restricted euxassay_012287_16
TS23: spinal cord Weak Uniform euxassay_012287_16
TS23: hindbrain Weak Uniform euxassay_012287_16
TS23: forebrain Weak Uniform euxassay_012287_16
TS23: midbrain Weak Uniform euxassay_012287_16
TS23: renal cortex Weak Regionally restricted euxassay_012287_16
Specimen euxassay_012287_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012287_17
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012287_17
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012287_17
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012287_17
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012287_17
TS23: spinal cord Weak Uniform euxassay_012287_17
TS23: midbrain Weak Uniform euxassay_012287_17
TS23: hindbrain Weak Uniform euxassay_012287_17
TS23: forebrain Weak Uniform euxassay_012287_17
TS23: renal cortex Weak Regionally restricted euxassay_012287_17
TS23: testis Weak Regionally restricted euxassay_012287_17
TS23: upper jaw molar Weak Regionally restricted euxassay_012287_17
TS23: lower jaw molar Weak Regionally restricted euxassay_012287_17
Specimen euxassay_012287_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012287_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012287_18
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012287_18
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012287_18
TS23: forebrain Weak Uniform euxassay_012287_18
TS23: hindbrain Weak Uniform euxassay_012287_18
TS23: midbrain Weak Uniform euxassay_012287_18
TS23: renal cortex Weak Regionally restricted euxassay_012287_18
TS23: testis Moderate Regionally restricted euxassay_012287_18
Specimen euxassay_012287_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012287_19
TS23: facial ganglion Moderate Regionally restricted euxassay_012287_19
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012287_19
TS23: midbrain Weak Uniform euxassay_012287_19
TS23: hindbrain Weak Uniform euxassay_012287_19
TS23: forebrain Weak Uniform euxassay_012287_19
TS23: renal cortex Weak Regionally restricted euxassay_012287_19
TS23: testis Moderate Regionally restricted euxassay_012287_19
Specimen euxassay_012287_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012287_20
TS23: facial ganglion Moderate Regionally restricted euxassay_012287_20
TS23: neural retina Moderate Regionally restricted euxassay_012287_20
TS23: hindbrain Weak Uniform euxassay_012287_20
TS23: forebrain Weak Uniform euxassay_012287_20
TS23: testis Weak Regionally restricted euxassay_012287_20
Specimen euxassay_012287_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012287_21
TS23: neural retina Moderate Regionally restricted euxassay_012287_21
TS23: hindbrain Weak Uniform euxassay_012287_21
TS23: forebrain Weak Uniform euxassay_012287_21
Specimen euxassay_012287_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_012287_22
TS23: forebrain Weak Uniform euxassay_012287_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory