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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828498
Gene symbol: Stim1
Gene name: stromal interaction molecule 1
Probe: MGC clone 13964
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006651_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_01
Specimen euxassay_006651_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_02
Specimen euxassay_006651_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_006651_03
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_03
TS23: choroid plexus Present euxassay_006651_03
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_03
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_03
Specimen euxassay_006651_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_006651_04
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_04
TS23: choroid plexus Present euxassay_006651_04
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_04
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_04
Specimen euxassay_006651_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_006651_05
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_05
TS23: choroid plexus Present euxassay_006651_05
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_05
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_05
TS23: ovary Moderate Regionally restricted euxassay_006651_05
Specimen euxassay_006651_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_006651_06
TS23: maxilla Moderate Regionally restricted euxassay_006651_06
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_006651_06
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_06
TS23: choroid plexus Present euxassay_006651_06
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_06
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006651_06
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_06
TS23: ovary Moderate Regionally restricted euxassay_006651_06
Specimen euxassay_006651_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_006651_07
TS23: maxilla Moderate Regionally restricted euxassay_006651_07
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_006651_07
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_07
TS23: choroid plexus Present euxassay_006651_07
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_006651_07 trigeminal motor nucleus
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006651_07
Specimen euxassay_006651_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: maxilla Moderate Regionally restricted euxassay_006651_08
TS23: mandible Moderate Regionally restricted euxassay_006651_08
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_006651_08
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_08
TS23: choroid plexus Present euxassay_006651_08
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_08
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_006651_08 facial motor nucleus
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_08
Specimen euxassay_006651_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: maxilla Moderate Regionally restricted euxassay_006651_09
TS23: mandible Moderate Regionally restricted euxassay_006651_09
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_006651_09
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_09
TS23: choroid plexus Present euxassay_006651_09
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006651_09 facial motor nucleus
TS23: ventral grey horn Moderate Regionally restricted euxassay_006651_09
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_09
Specimen euxassay_006651_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_006651_10
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_006651_10
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_10
TS23: choroid plexus Present euxassay_006651_10
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_10
TS23: ventral grey horn Moderate Regionally restricted euxassay_006651_10
Specimen euxassay_006651_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_006651_11
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_11
TS23: choroid plexus Present euxassay_006651_11
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_006651_11
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_11
TS23: tongue muscle Weak Regionally restricted euxassay_006651_11
TS23: ventral grey horn Moderate Regionally restricted euxassay_006651_11
Specimen euxassay_006651_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_12
TS23: choroid plexus Present euxassay_006651_12
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_12
TS23: tongue muscle Weak Regionally restricted euxassay_006651_12
TS23: ventral grey horn Moderate Regionally restricted euxassay_006651_12
Specimen euxassay_006651_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_006651_13
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_13
TS23: choroid plexus Present euxassay_006651_13
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_13
TS23: tongue muscle Weak Regionally restricted euxassay_006651_13
TS23: ventral grey horn Weak Regionally restricted euxassay_006651_13
Specimen euxassay_006651_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_006651_14
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_14
TS23: choroid plexus Present euxassay_006651_14
TS23: tongue muscle Weak Regionally restricted euxassay_006651_14
TS23: ventral grey horn Moderate Regionally restricted euxassay_006651_14
Specimen euxassay_006651_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_15
TS23: choroid plexus Present euxassay_006651_15
TS23: tongue muscle Weak Regionally restricted euxassay_006651_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006651_15 facial motor nucleus
TS23: ventral grey horn Moderate Regionally restricted euxassay_006651_15
Specimen euxassay_006651_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_006651_16
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_16
TS23: choroid plexus Present euxassay_006651_16
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_16
TS23: tongue muscle Weak Regionally restricted euxassay_006651_16
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_006651_16 facial motor nucleus
TS23: ventral grey horn Moderate Regionally restricted euxassay_006651_16
Specimen euxassay_006651_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_006651_17
TS23: maxilla Moderate Regionally restricted euxassay_006651_17
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_006651_17
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_17
TS23: choroid plexus Present euxassay_006651_17
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_17
TS23: tongue Weak Regionally restricted euxassay_006651_17
TS23: tongue muscle Weak Regionally restricted euxassay_006651_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_006651_17 trigeminal motor nucleus
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_17
Specimen euxassay_006651_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: maxilla Moderate Regionally restricted euxassay_006651_18
TS23: mandible Moderate Regionally restricted euxassay_006651_18
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_006651_18
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_18
TS23: choroid plexus Present euxassay_006651_18
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_18
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006651_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_18
Specimen euxassay_006651_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: maxilla Moderate Regionally restricted euxassay_006651_19
TS23: mandible Moderate Regionally restricted euxassay_006651_19
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_006651_19
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_19
TS23: choroid plexus Present euxassay_006651_19
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_19
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_19
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006651_19
Specimen euxassay_006651_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: maxilla Moderate Regionally restricted euxassay_006651_20
TS23: mandible Moderate Regionally restricted euxassay_006651_20
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_20
TS23: choroid plexus Present euxassay_006651_20
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_006651_20
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_20
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_20
Specimen euxassay_006651_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: maxilla Moderate Regionally restricted euxassay_006651_21
TS23: mandible Moderate Regionally restricted euxassay_006651_21
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_21
TS23: choroid plexus Present euxassay_006651_21
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_21
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_21
Specimen euxassay_006651_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_006651_22
TS23: maxilla Moderate Regionally restricted euxassay_006651_22
TS23: 4th ventricle lateral recess Moderate Regionally restricted euxassay_006651_22
TS23: choroid plexus Present euxassay_006651_22
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_22
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_22
TS23: ovary Moderate Regionally restricted euxassay_006651_22
Specimen euxassay_006651_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_006651_23
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_23
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006651_23
TS23: ovary Moderate Regionally restricted euxassay_006651_23
Specimen euxassay_006651_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006651_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory