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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828322
Gene symbol: Smarca4
Gene name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Probe: T55179
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019506_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019506_01
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_019506_01
TS23: telencephalon Strong Uniform euxassay_019506_01
Specimen euxassay_019506_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019506_02
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_019506_02
TS23: telencephalon Strong Uniform euxassay_019506_02
Specimen euxassay_019506_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_019506_03
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019506_03
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_019506_03
TS23: stomach Moderate Regionally restricted euxassay_019506_03
TS23: telencephalon Strong Uniform euxassay_019506_03
TS23: hindbrain Strong Uniform euxassay_019506_03
Specimen euxassay_019506_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019506_04
TS23: facial ganglion Strong Regionally restricted euxassay_019506_04
TS23: vibrissa Moderate Regionally restricted euxassay_019506_04
TS23: testis Weak Regionally restricted euxassay_019506_04
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_019506_04
TS23: stomach Weak Regionally restricted euxassay_019506_04
TS23: hindbrain Strong Uniform euxassay_019506_04
TS23: telencephalon Strong Uniform euxassay_019506_04
Specimen euxassay_019506_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019506_05
TS23: facial ganglion Strong Regionally restricted euxassay_019506_05
TS23: vibrissa Strong Regionally restricted euxassay_019506_05
TS23: lung Strong Regionally restricted euxassay_019506_05
TS23: testis Moderate Regionally restricted euxassay_019506_05
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_019506_05
TS23: stomach Weak Regionally restricted euxassay_019506_05
TS23: telencephalon Strong Uniform euxassay_019506_05
TS23: hindbrain Strong Uniform euxassay_019506_05
Specimen euxassay_019506_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019506_06
TS23: facial ganglion Strong Regionally restricted euxassay_019506_06
TS23: vibrissa Strong Regionally restricted euxassay_019506_06
TS23: lung Strong Regionally restricted euxassay_019506_06
TS23: upper jaw molar Strong Regionally restricted euxassay_019506_06
TS23: lower jaw molar Strong Regionally restricted euxassay_019506_06
TS23: stomach Weak Regionally restricted euxassay_019506_06
TS23: hindbrain Strong Uniform euxassay_019506_06
TS23: telencephalon Strong Uniform euxassay_019506_06
Specimen euxassay_019506_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019506_07
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_019506_07
TS23: vibrissa Strong Regionally restricted euxassay_019506_07
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019506_07
TS23: lung Strong Regionally restricted euxassay_019506_07
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019506_07
TS23: stomach Weak Regionally restricted euxassay_019506_07
TS23: telencephalon Strong Uniform euxassay_019506_07
TS23: diencephalon Strong Uniform euxassay_019506_07
TS23: hindbrain Strong Uniform euxassay_019506_07
TS23: midbrain Strong Uniform euxassay_019506_07
Specimen euxassay_019506_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_019506_08
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_019506_08
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019506_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019506_08
TS23: lung Moderate Regionally restricted euxassay_019506_08
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019506_08
TS23: metanephros Moderate Regionally restricted euxassay_019506_08
TS23: stomach Weak Regionally restricted euxassay_019506_08
TS23: midgut Weak Regionally restricted euxassay_019506_08
TS23: midbrain Moderate Uniform euxassay_019506_08
TS23: hindbrain Moderate Uniform euxassay_019506_08
TS23: telencephalon Moderate Uniform euxassay_019506_08
TS23: diencephalon Moderate Uniform euxassay_019506_08
Specimen euxassay_019506_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Strong Regionally restricted euxassay_019506_09
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019506_09
TS23: trigeminal nerve Moderate Regionally restricted euxassay_019506_09
TS23: olfactory epithelium Strong Regionally restricted euxassay_019506_09
TS23: lung Moderate Regionally restricted euxassay_019506_09
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019506_09
TS23: metanephros Moderate Regionally restricted euxassay_019506_09
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019506_09
TS23: clavicle Weak Regionally restricted euxassay_019506_09
TS23: stomach Weak Regionally restricted euxassay_019506_09
TS23: midbrain Moderate Uniform euxassay_019506_09
TS23: hindbrain Moderate Uniform euxassay_019506_09
TS23: telencephalon Moderate Uniform euxassay_019506_09
TS23: diencephalon Moderate Uniform euxassay_019506_09
Specimen euxassay_019506_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019506_10
TS23: lung Moderate Regionally restricted euxassay_019506_10
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019506_10
TS23: metanephros Moderate Regionally restricted euxassay_019506_10
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019506_10
TS23: upper jaw incisor Strong Regionally restricted euxassay_019506_10
TS23: lower jaw incisor Strong Regionally restricted euxassay_019506_10
TS23: clavicle Weak Regionally restricted euxassay_019506_10
TS23: cervical ganglion Strong Regionally restricted euxassay_019506_10
TS23: stomach Weak Regionally restricted euxassay_019506_10
TS23: pancreas Weak Regionally restricted euxassay_019506_10
TS23: midbrain Strong Uniform euxassay_019506_10
TS23: hindbrain Strong Uniform euxassay_019506_10
TS23: telencephalon Strong Uniform euxassay_019506_10
TS23: diencephalon Strong Uniform euxassay_019506_10
Specimen euxassay_019506_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019506_11
TS23: vomeronasal organ Moderate Regionally restricted euxassay_019506_11
TS23: lung Moderate Regionally restricted euxassay_019506_11
TS23: metanephros Moderate Regionally restricted euxassay_019506_11
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019506_11
TS23: upper jaw incisor Moderate Regionally restricted euxassay_019506_11
TS23: lower jaw incisor Moderate Regionally restricted euxassay_019506_11
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_019506_11
TS23: pancreas Weak Regionally restricted euxassay_019506_11
TS23: hindbrain Strong Uniform euxassay_019506_11
TS23: telencephalon Strong Uniform euxassay_019506_11
TS23: diencephalon Strong Uniform euxassay_019506_11
TS23: midbrain Strong Uniform euxassay_019506_11
TS23: spinal cord Strong Uniform euxassay_019506_11
Specimen euxassay_019506_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon Moderate Uniform euxassay_019506_12
Specimen euxassay_019506_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019506_13
TS23: thymus primordium Strong Regionally restricted euxassay_019506_13
TS23: esophagus Moderate Regionally restricted euxassay_019506_13
TS23: thoracic ganglion Strong Regionally restricted euxassay_019506_13
TS23: midgut Weak Regionally restricted euxassay_019506_13
TS23: spinal cord Strong Uniform euxassay_019506_13
TS23: midbrain Strong Uniform euxassay_019506_13
TS23: hindbrain Strong Uniform euxassay_019506_13
TS23: telencephalon Strong Uniform euxassay_019506_13
TS23: diencephalon Strong Uniform euxassay_019506_13
Specimen euxassay_019506_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Strong Regionally restricted euxassay_019506_14
TS23: vomeronasal organ Strong Regionally restricted euxassay_019506_14
TS23: lung Strong Regionally restricted euxassay_019506_14
TS23: thymus primordium Strong Regionally restricted euxassay_019506_14
TS23: esophagus Moderate Regionally restricted euxassay_019506_14
TS23: trachea Moderate Regionally restricted euxassay_019506_14
TS23: upper jaw incisor Moderate Regionally restricted euxassay_019506_14
TS23: lower jaw incisor Moderate Regionally restricted euxassay_019506_14
TS23: thoracic ganglion Strong Regionally restricted euxassay_019506_14
TS23: midgut Moderate Regionally restricted euxassay_019506_14
TS23: spinal cord Strong Uniform euxassay_019506_14
TS23: midbrain Strong Uniform euxassay_019506_14
TS23: hindbrain Strong Uniform euxassay_019506_14
TS23: telencephalon Strong Uniform euxassay_019506_14
TS23: diencephalon Strong Uniform euxassay_019506_14
Specimen euxassay_019506_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019506_15
TS23: lung Strong Regionally restricted euxassay_019506_15
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019506_15
TS23: thymus primordium Strong Regionally restricted euxassay_019506_15
TS23: trachea Moderate Regionally restricted euxassay_019506_15
TS23: upper jaw incisor Moderate Regionally restricted euxassay_019506_15
TS23: lower jaw incisor Moderate Regionally restricted euxassay_019506_15
TS23: midgut Moderate Regionally restricted euxassay_019506_15
TS23: spinal cord Strong Uniform euxassay_019506_15
TS23: midbrain Strong Uniform euxassay_019506_15
TS23: hindbrain Strong Uniform euxassay_019506_15
TS23: telencephalon Strong Uniform euxassay_019506_15
TS23: diencephalon Strong Uniform euxassay_019506_15
Specimen euxassay_019506_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019506_16
TS23: lung Weak Regionally restricted euxassay_019506_16
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019506_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_019506_16
TS23: thymus primordium Moderate Regionally restricted euxassay_019506_16
TS23: upper jaw incisor Moderate Regionally restricted euxassay_019506_16
TS23: midgut Moderate Regionally restricted euxassay_019506_16
TS23: pancreas Weak Regionally restricted euxassay_019506_16
TS23: spinal cord Strong Uniform euxassay_019506_16
TS23: midbrain Strong Uniform euxassay_019506_16
TS23: hindbrain Strong Uniform euxassay_019506_16
TS23: telencephalon Strong Uniform euxassay_019506_16
TS23: diencephalon Strong Uniform euxassay_019506_16
Specimen euxassay_019506_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal nerve Strong Regionally restricted euxassay_019506_17
TS23: olfactory epithelium Strong Regionally restricted euxassay_019506_17
TS23: lung Moderate Regionally restricted euxassay_019506_17
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019506_17
TS23: metanephros Moderate Regionally restricted euxassay_019506_17
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019506_17
TS23: clavicle Moderate Regionally restricted euxassay_019506_17
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_019506_17
TS23: midgut Moderate Regionally restricted euxassay_019506_17
TS23: spinal cord Strong Uniform euxassay_019506_17
TS23: midbrain Strong Uniform euxassay_019506_17
TS23: hindbrain Strong Uniform euxassay_019506_17
TS23: telencephalon Strong Uniform euxassay_019506_17
TS23: diencephalon Strong Uniform euxassay_019506_17
Specimen euxassay_019506_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019506_18
TS23: vagus ganglion Strong Regionally restricted euxassay_019506_18
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_019506_18
TS23: olfactory epithelium Strong Regionally restricted euxassay_019506_18
TS23: lung Moderate Regionally restricted euxassay_019506_18
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019506_18
TS23: metanephros Moderate Regionally restricted euxassay_019506_18
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019506_18
TS23: clavicle Moderate Regionally restricted euxassay_019506_18
TS23: midgut Moderate Regionally restricted euxassay_019506_18
TS23: spinal cord Strong Uniform euxassay_019506_18
TS23: midbrain Strong Uniform euxassay_019506_18
TS23: hindbrain Strong Uniform euxassay_019506_18
TS23: telencephalon Strong Uniform euxassay_019506_18
TS23: diencephalon Strong Uniform euxassay_019506_18
Specimen euxassay_019506_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019506_19
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_019506_19
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_019506_19
TS23: vibrissa Strong Regionally restricted euxassay_019506_19
TS23: lung Moderate Regionally restricted euxassay_019506_19
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019506_19
TS23: metanephros Moderate Regionally restricted euxassay_019506_19
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019506_19
TS23: upper jaw molar Moderate Regionally restricted euxassay_019506_19
TS23: lower jaw molar Moderate Regionally restricted euxassay_019506_19
TS23: testis Weak Regionally restricted euxassay_019506_19
TS23: midgut Moderate Regionally restricted euxassay_019506_19
TS23: midbrain Strong Uniform euxassay_019506_19
TS23: hindbrain Strong Uniform euxassay_019506_19
TS23: diencephalon Strong Uniform euxassay_019506_19
TS23: telencephalon Strong Uniform euxassay_019506_19
Specimen euxassay_019506_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_019506_20
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_019506_20
TS23: vibrissa Moderate Regionally restricted euxassay_019506_20
TS23: lung Weak Regionally restricted euxassay_019506_20
TS23: metanephros Weak Regionally restricted euxassay_019506_20
TS23: testis Weak Regionally restricted euxassay_019506_20
TS23: telencephalon Moderate Uniform euxassay_019506_20
TS23: midbrain Weak Uniform euxassay_019506_20
TS23: hindbrain Weak Uniform euxassay_019506_20
Specimen euxassay_019506_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019506_21
TS23: facial ganglion Strong Regionally restricted euxassay_019506_21
TS23: vibrissa Strong Regionally restricted euxassay_019506_21
TS23: lung Weak Regionally restricted euxassay_019506_21
TS23: metanephros Strong Regionally restricted euxassay_019506_21
TS23: testis Moderate Regionally restricted euxassay_019506_21
TS23: hindbrain Strong Uniform euxassay_019506_21
TS23: telencephalon Strong Uniform euxassay_019506_21
Specimen euxassay_019506_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019506_22
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019506_22
TS23: vibrissa Moderate Regionally restricted euxassay_019506_22
TS23: lung Moderate Regionally restricted euxassay_019506_22
TS23: testis Moderate Regionally restricted euxassay_019506_22
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_019506_22
TS23: telencephalon Strong Uniform euxassay_019506_22
TS23: hindbrain Strong Uniform euxassay_019506_22
Specimen euxassay_019506_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019506_23
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019506_23
TS23: lung Moderate Regionally restricted euxassay_019506_23
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_019506_23
TS23: hindbrain Strong Uniform euxassay_019506_23
TS23: telencephalon Strong Uniform euxassay_019506_23
Specimen euxassay_019506_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019506_24
TS23: lung Moderate Regionally restricted euxassay_019506_24
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_019506_24
TS23: telencephalon Strong Uniform euxassay_019506_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory