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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828258
Gene symbol: Slc6a1
Gene name: solute carrier family 6 (neurotransmitter transporter, GABA), member 1
Probe: MGC clone 69943
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: brain meninges Strong
TS23: cerebellum Strong
TS23: cerebral cortex Strong
TS23: corpus striatum Strong
TS23: hypothalamus Strong
TS23: medulla oblongata Strong
TS23: midbrain Strong
TS23: pons Strong
TS23: thalamus Strong
Specimen euxassay_008275_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_01
TS23: neural retina Strong Regionally restricted euxassay_008275_01
Specimen euxassay_008275_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_02
TS23: neural retina Strong Regionally restricted euxassay_008275_02
Specimen euxassay_008275_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_03
TS23: neural retina Strong Regionally restricted euxassay_008275_03
Specimen euxassay_008275_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_04
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_008275_04
Specimen euxassay_008275_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_05
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_008275_05
Specimen euxassay_008275_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_008275_06
TS23: glossopharyngeal ganglion Moderate Spotted euxassay_008275_06
Specimen euxassay_008275_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_07
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_008275_07
TS23: glossopharyngeal ganglion Moderate Spotted euxassay_008275_07
Specimen euxassay_008275_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_08
TS23: spinal cord Strong Regionally restricted euxassay_008275_08
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_008275_08
Specimen euxassay_008275_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_09
TS23: spinal cord Strong Regionally restricted euxassay_008275_09
Specimen euxassay_008275_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_10
TS23: spinal cord Strong Regionally restricted euxassay_008275_10
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_008275_10
Specimen euxassay_008275_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_11
TS23: spinal cord Strong Regionally restricted euxassay_008275_11
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_008275_11
Specimen euxassay_008275_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_12
TS23: spinal cord Strong Regionally restricted euxassay_008275_12
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_008275_12
Specimen euxassay_008275_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_13
TS23: spinal cord Strong Regionally restricted euxassay_008275_13
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_008275_13
Specimen euxassay_008275_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_14
TS23: spinal cord Strong Regionally restricted euxassay_008275_14
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_008275_14
Specimen euxassay_008275_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_15
TS23: spinal cord Strong Regionally restricted euxassay_008275_15
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_008275_15
TS23: glossopharyngeal ganglion Moderate Spotted euxassay_008275_15
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_008275_15
Specimen euxassay_008275_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_16
TS23: spinal cord Strong Regionally restricted euxassay_008275_16
TS23: glossopharyngeal ganglion Moderate Spotted euxassay_008275_16
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_008275_16
Specimen euxassay_008275_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_17
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_008275_17
Specimen euxassay_008275_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_18
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_008275_18
Specimen euxassay_008275_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_19
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_008275_19
Specimen euxassay_008275_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_20
TS23: neural retina Strong Regionally restricted euxassay_008275_20
Specimen euxassay_008275_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Regionally restricted euxassay_008275_21
TS23: neural retina Strong Regionally restricted euxassay_008275_21
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory