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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827950
Gene symbol: Sema6d
Gene name: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
Probe: T38319
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_010735_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_01
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_010735_01
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_01
TS23: embryo Strong Single cells euxassay_010735_01
Specimen euxassay_010735_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_02
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_010735_02
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_02
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_02
TS23: pons mantle layer Strong Single cells euxassay_010735_02
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_02
TS23: embryo Strong Single cells euxassay_010735_02
Specimen euxassay_010735_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_010735_03
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_03
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_03
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_03
TS23: pons mantle layer Strong Single cells euxassay_010735_03
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_03
TS23: trigeminal ganglion Strong Regionally restricted euxassay_010735_03
TS23: embryo Strong Single cells euxassay_010735_03
Specimen euxassay_010735_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_04
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_04
TS23: midbrain mantle layer Strong Single cells euxassay_010735_04
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_04
TS23: pons mantle layer Strong Single cells euxassay_010735_04
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_04
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_04
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_04
TS23: trigeminal ganglion Strong Regionally restricted euxassay_010735_04
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_010735_04
TS23: embryo Strong Single cells euxassay_010735_04
Specimen euxassay_010735_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_05
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_05
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_05
TS23: midbrain mantle layer Strong Single cells euxassay_010735_05
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_05
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_05
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_05
TS23: pons mantle layer Strong Single cells euxassay_010735_05
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_05
TS23: trigeminal ganglion Strong Regionally restricted euxassay_010735_05
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_010735_05
TS23: embryo Strong Single cells euxassay_010735_05
Specimen euxassay_010735_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_06
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_06
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_06
TS23: midbrain mantle layer Strong Single cells euxassay_010735_06
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_06
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_06
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_06
TS23: pons mantle layer Strong Single cells euxassay_010735_06
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_06
TS23: trigeminal ganglion Strong Regionally restricted euxassay_010735_06
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_010735_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_010735_06
TS23: embryo Strong Single cells euxassay_010735_06
Specimen euxassay_010735_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_07
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_07
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_07
TS23: midbrain mantle layer Strong Single cells euxassay_010735_07
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_07
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_07
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_07
TS23: pons mantle layer Strong Single cells euxassay_010735_07
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_07
TS23: trigeminal ganglion Strong Regionally restricted euxassay_010735_07
TS23: facial ganglion Strong Regionally restricted euxassay_010735_07
TS23: dorsal root ganglion Strong Regionally restricted euxassay_010735_07
TS23: embryo Strong Single cells euxassay_010735_07
Specimen euxassay_010735_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_08
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_08
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_08
TS23: midbrain mantle layer Strong Single cells euxassay_010735_08
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_08
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_08
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_08
TS23: pons mantle layer Strong Single cells euxassay_010735_08
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_08
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_010735_08
TS23: trigeminal ganglion Strong Regionally restricted euxassay_010735_08
TS23: dorsal root ganglion Strong Regionally restricted euxassay_010735_08
TS23: embryo Strong Single cells euxassay_010735_08
Specimen euxassay_010735_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_09
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_09
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_09
TS23: midbrain mantle layer Strong Single cells euxassay_010735_09
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_09
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_09
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_09
TS23: pons mantle layer Strong Single cells euxassay_010735_09
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_09
TS23: trigeminal ganglion Strong Regionally restricted euxassay_010735_09
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_010735_09
TS23: dorsal root ganglion Strong Regionally restricted euxassay_010735_09
TS23: spinal cord mantle layer Strong Single cells euxassay_010735_09
TS23: embryo Strong Single cells euxassay_010735_09
Specimen euxassay_010735_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_10
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_10
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_10
TS23: midbrain mantle layer Strong Single cells euxassay_010735_10
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_10
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_10
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_10
TS23: pons mantle layer Strong Single cells euxassay_010735_10
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_10
TS23: dorsal root ganglion Strong Regionally restricted euxassay_010735_10
TS23: spinal cord mantle layer Strong Single cells euxassay_010735_10
TS23: embryo Strong Single cells euxassay_010735_10
Specimen euxassay_010735_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_11
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_11
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_11
TS23: midbrain mantle layer Strong Single cells euxassay_010735_11
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_010735_11
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_11
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_11
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_11
TS23: pons mantle layer Strong Single cells euxassay_010735_11
TS23: dorsal root ganglion Strong Regionally restricted euxassay_010735_11
TS23: spinal cord mantle layer Strong Single cells euxassay_010735_11
TS23: embryo Strong Single cells euxassay_010735_11
Specimen euxassay_010735_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_12
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_12
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_12
TS23: midbrain mantle layer Strong Single cells euxassay_010735_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_010735_12
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_12
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_12
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_12
TS23: pons mantle layer Strong Single cells euxassay_010735_12
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_12
TS23: dorsal root ganglion Strong Regionally restricted euxassay_010735_12
TS23: spinal cord mantle layer Strong Single cells euxassay_010735_12
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_010735_12
TS23: embryo Strong Single cells euxassay_010735_12
Specimen euxassay_010735_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_13
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_010735_13
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_13
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_13
TS23: midbrain mantle layer Strong Single cells euxassay_010735_13
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_13
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_13
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_13
TS23: pons mantle layer Strong Single cells euxassay_010735_13
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_13
TS23: dorsal root ganglion Strong Regionally restricted euxassay_010735_13
TS23: spinal cord mantle layer Strong Single cells euxassay_010735_13
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_010735_13
TS23: embryo Strong Single cells euxassay_010735_13
Specimen euxassay_010735_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_14
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_010735_14
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_14
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_14
TS23: midbrain mantle layer Strong Single cells euxassay_010735_14
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_14
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_14
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_14
TS23: pons mantle layer Strong Single cells euxassay_010735_14
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_14
TS23: spinal cord mantle layer Strong Single cells euxassay_010735_14
TS23: embryo Strong Single cells euxassay_010735_14
Specimen euxassay_010735_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_15
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_15
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_15
TS23: midbrain mantle layer Strong Single cells euxassay_010735_15
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_15
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_15
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_15
TS23: pons mantle layer Strong Single cells euxassay_010735_15
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_15
TS23: dorsal root ganglion Strong Regionally restricted euxassay_010735_15
TS23: spinal cord mantle layer Strong Single cells euxassay_010735_15
TS23: embryo Strong Single cells euxassay_010735_15
Specimen euxassay_010735_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_16
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_16
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_16
TS23: midbrain mantle layer Strong Single cells euxassay_010735_16
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_16
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_16
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_16
TS23: pons mantle layer Strong Single cells euxassay_010735_16
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_16
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_010735_16
TS23: dorsal root ganglion Strong Regionally restricted euxassay_010735_16
TS23: embryo Strong Single cells euxassay_010735_16
Specimen euxassay_010735_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_17
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_17
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_17
TS23: midbrain mantle layer Strong Single cells euxassay_010735_17
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_17
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_17
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_17
TS23: pons mantle layer Strong Single cells euxassay_010735_17
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_17
TS23: trigeminal ganglion Strong Regionally restricted euxassay_010735_17
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_010735_17
TS23: dorsal root ganglion Strong Regionally restricted euxassay_010735_17
TS23: embryo Strong Single cells euxassay_010735_17
Specimen euxassay_010735_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_18
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_18
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010735_18
TS23: midbrain mantle layer Strong Single cells euxassay_010735_18
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_18
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_18
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_18
TS23: pons mantle layer Strong Single cells euxassay_010735_18
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_18
TS23: trigeminal ganglion Strong Regionally restricted euxassay_010735_18
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_010735_18
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_010735_18
TS23: dorsal root ganglion Strong Regionally restricted euxassay_010735_18
TS23: embryo Strong Single cells euxassay_010735_18
Specimen euxassay_010735_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_19
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_19
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_19
TS23: pons mantle layer Strong Single cells euxassay_010735_19
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_19
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_19
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_19
TS23: trigeminal ganglion Strong Regionally restricted euxassay_010735_19
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_010735_19
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_010735_19
TS23: embryo Strong Single cells euxassay_010735_19
Specimen euxassay_010735_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_20
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_20
TS23: pons mantle layer Strong Single cells euxassay_010735_20
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_010735_20
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010735_20
TS23: medulla oblongata alar plate mantle layer Strong Single cells euxassay_010735_20
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_20
TS23: trigeminal ganglion Strong Regionally restricted euxassay_010735_20
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_010735_20
TS23: embryo Strong Single cells euxassay_010735_20
Specimen euxassay_010735_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_21
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_21
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010735_21
TS23: trigeminal ganglion Strong Regionally restricted euxassay_010735_21
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_010735_21
TS23: embryo Strong Single cells euxassay_010735_21
Specimen euxassay_010735_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_22
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_010735_22
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_22
TS23: trigeminal ganglion Strong Regionally restricted euxassay_010735_22
TS23: embryo Strong Single cells euxassay_010735_22
Specimen euxassay_010735_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010735_23
TS23: cerebral cortex ventricular layer Strong Regionally restricted euxassay_010735_23
TS23: telencephalon mantle layer Strong Single cells euxassay_010735_23
TS23: embryo Strong Single cells euxassay_010735_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory