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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827838
Gene symbol: Runx3
Gene name: runt related transcription factor 3
Probe: T55171
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019644_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_019644_01
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_019644_01
TS23: humerus Moderate Regionally restricted euxassay_019644_01
TS23: cornea epithelium Strong Regionally restricted euxassay_019644_01
Specimen euxassay_019644_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_019644_02
TS23: mandible Strong Regionally restricted euxassay_019644_02
TS23: forelimb digit 3 mesenchyme Strong Regionally restricted euxassay_019644_02
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_019644_02
TS23: humerus Moderate Regionally restricted euxassay_019644_02
TS23: cornea epithelium Strong Regionally restricted euxassay_019644_02
Specimen euxassay_019644_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_019644_03
TS23: mandible Strong Regionally restricted euxassay_019644_03
TS23: maxilla Strong Regionally restricted euxassay_019644_03
TS23: fibula Moderate Regionally restricted euxassay_019644_03
TS23: femur Moderate Regionally restricted euxassay_019644_03
TS23: forelimb digit 3 mesenchyme Strong Regionally restricted euxassay_019644_03
TS23: forelimb digit 2 mesenchyme Strong Regionally restricted euxassay_019644_03
TS23: orbito-sphenoid Strong Regionally restricted euxassay_019644_03
TS23: humerus Weak Regionally restricted euxassay_019644_03
TS23: trigeminal ganglion Strong Single cells euxassay_019644_03
Specimen euxassay_019644_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_019644_04
TS23: mandible Strong Regionally restricted euxassay_019644_04
TS23: tibia Moderate Regionally restricted euxassay_019644_04
TS23: fibula Moderate Regionally restricted euxassay_019644_04
TS23: femur Weak Regionally restricted euxassay_019644_04
TS23: forelimb digit 3 mesenchyme Strong Regionally restricted euxassay_019644_04
TS23: forelimb digit 2 mesenchyme Strong Regionally restricted euxassay_019644_04
TS23: orbito-sphenoid Strong Regionally restricted euxassay_019644_04
TS23: trigeminal ganglion Strong Single cells euxassay_019644_04
TS23: cornea epithelium Moderate Regionally restricted euxassay_019644_04
Specimen euxassay_019644_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_019644_05
TS23: maxilla Strong Regionally restricted euxassay_019644_05
TS23: mandible Strong Regionally restricted euxassay_019644_05
TS23: vibrissa Strong Regionally restricted euxassay_019644_05
TS23: tibia Strong Regionally restricted euxassay_019644_05
TS23: fibula Strong Regionally restricted euxassay_019644_05
TS23: forelimb digit 3 mesenchyme Strong Regionally restricted euxassay_019644_05
TS23: forelimb digit 2 mesenchyme Strong Regionally restricted euxassay_019644_05
TS23: femur Weak Regionally restricted euxassay_019644_05
TS23: orbito-sphenoid Strong Regionally restricted euxassay_019644_05
TS23: clavicle Moderate Regionally restricted euxassay_019644_05
TS23: trigeminal ganglion Strong Single cells euxassay_019644_05
Specimen euxassay_019644_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_019644_06
TS23: axial skeleton Moderate Regionally restricted euxassay_019644_06
TS23: maxilla Strong Regionally restricted euxassay_019644_06
TS23: mandible Strong Regionally restricted euxassay_019644_06
TS23: vibrissa Strong Regionally restricted euxassay_019644_06
TS23: hindlimb digit 1 metatarsal Strong Regionally restricted euxassay_019644_06
TS23: hindlimb digit 2 metatarsal Strong Regionally restricted euxassay_019644_06
TS23: hindlimb digit 3 metatarsal Strong Regionally restricted euxassay_019644_06
TS23: femur Moderate Regionally restricted euxassay_019644_06
TS23: clavicle Moderate Regionally restricted euxassay_019644_06
TS23: trigeminal ganglion Strong Single cells euxassay_019644_06
Specimen euxassay_019644_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_019644_07
TS23: axial skeleton Moderate Regionally restricted euxassay_019644_07
TS23: maxilla Strong Regionally restricted euxassay_019644_07
TS23: mandible Strong Regionally restricted euxassay_019644_07
TS23: vibrissa Moderate Regionally restricted euxassay_019644_07
TS23: hindlimb digit 4 metatarsal Strong Regionally restricted euxassay_019644_07
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019644_07
TS23: hindlimb digit 3 metatarsal Strong Regionally restricted euxassay_019644_07
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_019644_07
TS23: hindlimb digit 2 metatarsal Strong Regionally restricted euxassay_019644_07
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_019644_07
TS23: hindlimb digit 1 metatarsal Strong Regionally restricted euxassay_019644_07
TS23: femur Moderate Regionally restricted euxassay_019644_07
TS23: clavicle Moderate Regionally restricted euxassay_019644_07
TS23: trigeminal ganglion Strong Single cells euxassay_019644_07
TS23: dorsal root ganglion Strong Single cells euxassay_019644_07
Specimen euxassay_019644_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_019644_08
TS23: axial skeleton Moderate Regionally restricted euxassay_019644_08
TS23: maxilla Strong Regionally restricted euxassay_019644_08
TS23: mandible Strong Regionally restricted euxassay_019644_08
TS23: vibrissa Moderate Regionally restricted euxassay_019644_08
TS23: hindlimb digit 5 metatarsal Strong Regionally restricted euxassay_019644_08
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019644_08
TS23: hindlimb digit 4 metatarsal Strong Regionally restricted euxassay_019644_08
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019644_08
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_019644_08
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_019644_08
TS23: femur Weak Regionally restricted euxassay_019644_08
TS23: clavicle Moderate Regionally restricted euxassay_019644_08
TS23: trigeminal ganglion Strong Single cells euxassay_019644_08
TS23: dorsal root ganglion Strong Single cells euxassay_019644_08
Specimen euxassay_019644_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_019644_09
TS23: maxilla Strong Regionally restricted euxassay_019644_09
TS23: mandible Strong Regionally restricted euxassay_019644_09
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_019644_09
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019644_09
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019644_09
TS23: clavicle Strong Regionally restricted euxassay_019644_09
TS23: dorsal root ganglion Strong Single cells euxassay_019644_09
Specimen euxassay_019644_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Moderate Regionally restricted euxassay_019644_10
TS23: upper jaw incisor Strong Regionally restricted euxassay_019644_10
TS23: lower jaw incisor Strong Regionally restricted euxassay_019644_10
TS23: mandible Strong Regionally restricted euxassay_019644_10
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_019644_10
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019644_10
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019644_10
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_019644_10
TS23: basioccipital bone Moderate Regionally restricted euxassay_019644_10
TS23: basisphenoid bone Moderate Regionally restricted euxassay_019644_10
TS23: clavicle Strong Regionally restricted euxassay_019644_10
TS23: thymus primordium Moderate Single cells euxassay_019644_10
TS23: dorsal root ganglion Strong Single cells euxassay_019644_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019644_10
Specimen euxassay_019644_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Strong Regionally restricted euxassay_019644_11
TS23: lower jaw incisor Strong Regionally restricted euxassay_019644_11
TS23: mandible Strong Regionally restricted euxassay_019644_11
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_019644_11
TS23: basioccipital bone Moderate Regionally restricted euxassay_019644_11
TS23: basisphenoid bone Moderate Regionally restricted euxassay_019644_11
TS23: thymus primordium Moderate Single cells euxassay_019644_11
TS23: dorsal root ganglion Strong Single cells euxassay_019644_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019644_11
Specimen euxassay_019644_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lower jaw incisor Strong Regionally restricted euxassay_019644_12
TS23: upper jaw incisor Strong Regionally restricted euxassay_019644_12
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_019644_12
TS23: basioccipital bone Moderate Regionally restricted euxassay_019644_12
TS23: basisphenoid bone Moderate Regionally restricted euxassay_019644_12
TS23: thymus primordium Moderate Single cells euxassay_019644_12
TS23: dorsal root ganglion Strong Single cells euxassay_019644_12
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019644_12
Specimen euxassay_019644_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: maxilla Strong Regionally restricted euxassay_019644_13
TS23: basioccipital bone Moderate Regionally restricted euxassay_019644_13
TS23: basisphenoid bone Moderate Regionally restricted euxassay_019644_13
TS23: thymus primordium Strong Single cells euxassay_019644_13
TS23: dorsal root ganglion Strong Single cells euxassay_019644_13
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019644_13
Specimen euxassay_019644_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Moderate Regionally restricted euxassay_019644_14
TS23: maxilla Strong Regionally restricted euxassay_019644_14
TS23: mandible Strong Regionally restricted euxassay_019644_14
TS23: clavicle Strong Regionally restricted euxassay_019644_14
TS23: dorsal root ganglion Strong Single cells euxassay_019644_14
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_019644_14
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019644_14
Specimen euxassay_019644_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Moderate Regionally restricted euxassay_019644_15
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_019644_15
TS23: maxilla Strong Regionally restricted euxassay_019644_15
TS23: mandible Strong Regionally restricted euxassay_019644_15
TS23: clavicle Strong Regionally restricted euxassay_019644_15
TS23: trigeminal ganglion Strong Single cells euxassay_019644_15
TS23: dorsal root ganglion Strong Single cells euxassay_019644_15
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_019644_15
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019644_15
Specimen euxassay_019644_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_019644_16
TS23: axial skeleton Moderate Regionally restricted euxassay_019644_16
TS23: maxilla Strong Regionally restricted euxassay_019644_16
TS23: mandible Strong Regionally restricted euxassay_019644_16
TS23: clavicle Strong Regionally restricted euxassay_019644_16
TS23: trigeminal ganglion Strong Single cells euxassay_019644_16
TS23: dorsal root ganglion Strong Single cells euxassay_019644_16
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_019644_16
Specimen euxassay_019644_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_019644_17
TS23: rib Moderate Regionally restricted euxassay_019644_17
TS23: maxilla Strong Regionally restricted euxassay_019644_17
TS23: mandible Strong Regionally restricted euxassay_019644_17
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_019644_17
TS23: trigeminal ganglion Strong Single cells euxassay_019644_17
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_019644_17
Specimen euxassay_019644_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_019644_18
TS23: maxilla Strong Regionally restricted euxassay_019644_18
TS23: mandible Strong Regionally restricted euxassay_019644_18
TS23: vibrissa Moderate Regionally restricted euxassay_019644_18
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_019644_18
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_019644_18
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_019644_18
TS23: trigeminal ganglion Strong Single cells euxassay_019644_18
Specimen euxassay_019644_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_019644_19
TS23: mandible Strong Regionally restricted euxassay_019644_19
TS23: maxilla Strong Regionally restricted euxassay_019644_19
TS23: vibrissa Moderate Regionally restricted euxassay_019644_19
TS23: orbito-sphenoid Strong Regionally restricted euxassay_019644_19
TS23: turbinate bone primordium Strong Regionally restricted euxassay_019644_19
TS23: scapula Moderate Regionally restricted euxassay_019644_19
TS23: trigeminal ganglion Strong Single cells euxassay_019644_19
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory