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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827135
Gene symbol: Pdlim5
Gene name: PDZ and LIM domain 5
Probe: T31692
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_011640_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hand mesenchyme Moderate Regionally restricted euxassay_011640_04
TS23: foot mesenchyme Moderate Regionally restricted euxassay_011640_04
Specimen euxassay_011640_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot mesenchyme Moderate Regionally restricted euxassay_011640_05
TS23: hand mesenchyme Moderate Regionally restricted euxassay_011640_05
Specimen euxassay_011640_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Moderate Regionally restricted euxassay_011640_06
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_011640_06
TS23: stomach Moderate Regionally restricted euxassay_011640_06
TS23: foot mesenchyme Moderate Regionally restricted euxassay_011640_06
Specimen euxassay_011640_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Moderate Regionally restricted euxassay_011640_07
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_011640_07
TS23: stomach Weak Regionally restricted euxassay_011640_07
Specimen euxassay_011640_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011640_08
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011640_08
TS23: stomach Weak Regionally restricted euxassay_011640_08
TS23: metanephros Weak Regionally restricted euxassay_011640_08
Specimen euxassay_011640_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011640_09
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011640_09
TS23: stomach Weak Regionally restricted euxassay_011640_09
TS23: midgut Weak Regionally restricted euxassay_011640_09
TS23: submandibular gland primordium Weak Regionally restricted euxassay_011640_09
TS23: metanephros Weak Regionally restricted euxassay_011640_09
Specimen euxassay_011640_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011640_10
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011640_10
TS23: midgut Weak Regionally restricted euxassay_011640_10
TS23: stomach Weak Regionally restricted euxassay_011640_10
TS23: submandibular gland primordium Weak Regionally restricted euxassay_011640_10
TS23: metanephros Weak Regionally restricted euxassay_011640_10
Specimen euxassay_011640_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011640_11
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011640_11
TS23: axial skeleton tail region Weak Regionally restricted euxassay_011640_11
TS23: stomach Weak Regionally restricted euxassay_011640_11
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_011640_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_011640_11
TS23: submandibular gland primordium Weak Regionally restricted euxassay_011640_11
TS23: metanephros Weak Regionally restricted euxassay_011640_11
TS23: clavicle Weak Regionally restricted euxassay_011640_11
Specimen euxassay_011640_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Weak Regionally restricted euxassay_011640_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_011640_12
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_011640_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_011640_12
TS23: metencephalon floor plate Moderate Regionally restricted euxassay_011640_12
TS23: medulla oblongata floor plate Moderate Regionally restricted euxassay_011640_12
Specimen euxassay_011640_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Weak Regionally restricted euxassay_011640_13
TS23: axial skeleton Weak Regionally restricted euxassay_011640_13
TS23: midgut Moderate Regionally restricted euxassay_011640_13
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_011640_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_011640_13
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_011640_13
TS23: medulla oblongata floor plate Moderate Regionally restricted euxassay_011640_13
TS23: metencephalon floor plate Moderate Regionally restricted euxassay_011640_13
TS23: alar columns Moderate Regionally restricted euxassay_011640_13
TS23: ventral grey horn Moderate Regionally restricted euxassay_011640_13
Specimen euxassay_011640_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Moderate Regionally restricted euxassay_011640_14
TS23: trachea Moderate Regionally restricted euxassay_011640_14
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_011640_14
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_011640_14
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_011640_14
TS23: ventral grey horn Moderate Regionally restricted euxassay_011640_14
TS23: dorsal grey horn Moderate Regionally restricted euxassay_011640_14
TS23: bladder Weak Regionally restricted euxassay_011640_14
TS23: urethra Weak Regionally restricted euxassay_011640_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: esophagus Moderate Regionally restricted euxassay_011640_14
Specimen euxassay_011640_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_011640_15
TS23: metencephalon part of 4th ventricle choroid plexus Moderate Regionally restricted euxassay_011640_15
TS23: trachea Moderate Regionally restricted euxassay_011640_15
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_011640_15
TS23: axial skeleton Moderate Regionally restricted euxassay_011640_15
TS23: midgut Strong Regionally restricted euxassay_011640_15
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_011640_15
TS23: dorsal grey horn Moderate Regionally restricted euxassay_011640_15
TS23: ventral grey horn Moderate Regionally restricted euxassay_011640_15
TS23: bladder Weak Regionally restricted euxassay_011640_15
TS23: urethra Weak Regionally restricted euxassay_011640_15 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
Specimen euxassay_011640_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Moderate Regionally restricted euxassay_011640_16
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_011640_16
TS23: axial skeleton Moderate Regionally restricted euxassay_011640_16
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_011640_16
TS23: midgut Strong Regionally restricted euxassay_011640_16
TS23: bladder Weak Regionally restricted euxassay_011640_16
TS23: urethra Weak Regionally restricted euxassay_011640_16 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
Specimen euxassay_011640_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Moderate Regionally restricted euxassay_011640_17
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_011640_17
TS23: midgut Strong Regionally restricted euxassay_011640_17
Specimen euxassay_011640_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Moderate Regionally restricted euxassay_011640_18
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_011640_18
TS23: midgut Strong Regionally restricted euxassay_011640_18
TS23: submandibular gland primordium Weak Regionally restricted euxassay_011640_18
TS23: metanephros Weak Regionally restricted euxassay_011640_18
TS23: clavicle Weak Regionally restricted euxassay_011640_18
Specimen euxassay_011640_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Moderate Regionally restricted euxassay_011640_19
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_011640_19
TS23: submandibular gland primordium Weak Regionally restricted euxassay_011640_19
TS23: metanephros Weak Regionally restricted euxassay_011640_19
Specimen euxassay_011640_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011640_20
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011640_20
TS23: submandibular gland primordium Weak Regionally restricted euxassay_011640_20
TS23: metanephros Weak Regionally restricted euxassay_011640_20
Specimen euxassay_011640_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metanephros Weak Regionally restricted euxassay_011640_21
Specimen euxassay_011640_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metanephros Weak Regionally restricted euxassay_011640_22
Specimen euxassay_011640_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: foot mesenchyme Moderate Regionally restricted euxassay_011640_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory