About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827133
Gene symbol: Pdlim1
Gene name: PDZ and LIM domain 1 (elfin)
Probe: IMAGE clone 2076828
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_000772_01: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_000772_01
TS23: embryo Weak Regionally restricted euxassay_000772_01
TS23: skin Present euxassay_000772_01
Specimen euxassay_000772_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_000772_02
TS23: embryo Weak Regionally restricted euxassay_000772_02
TS23: skin Present euxassay_000772_02
Specimen euxassay_000772_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_000772_03
TS23: embryo Weak Regionally restricted euxassay_000772_03
TS23: skin Present euxassay_000772_03
Specimen euxassay_000772_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_000772_04
TS23: embryo Weak Regionally restricted euxassay_000772_04
TS23: skin Present euxassay_000772_04
Specimen euxassay_000772_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_000772_05
TS23: embryo Weak Regionally restricted euxassay_000772_05
TS23: skin Present euxassay_000772_05
Specimen euxassay_000772_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo Weak Regionally restricted euxassay_000772_06
TS23: skin Present euxassay_000772_06
Specimen euxassay_000772_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_07
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_07
TS23: embryo Weak Regionally restricted euxassay_000772_07
TS23: skin Present euxassay_000772_07
Specimen euxassay_000772_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_08
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_08
TS23: embryo Weak Regionally restricted euxassay_000772_08
TS23: skin Present euxassay_000772_08
Specimen euxassay_000772_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_09
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_09
TS23: embryo Weak Regionally restricted euxassay_000772_09
TS23: skin Present euxassay_000772_09
Specimen euxassay_000772_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_10
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_10
TS23: embryo Weak Regionally restricted euxassay_000772_10
TS23: skin Present euxassay_000772_10
Specimen euxassay_000772_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_11
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_11
TS23: embryo Weak Regionally restricted euxassay_000772_11
TS23: skin Present euxassay_000772_11
Specimen euxassay_000772_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_12
TS23: thymus primordium Moderate Uniform euxassay_000772_12
TS23: esophagus Weak Regionally restricted euxassay_000772_12
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_12
TS23: embryo Weak Regionally restricted euxassay_000772_12
TS23: skin Present euxassay_000772_12
Specimen euxassay_000772_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_13
TS23: olfactory epithelium Weak Regionally restricted euxassay_000772_13
TS23: thymus primordium Moderate Uniform euxassay_000772_13
TS23: esophagus Weak Regionally restricted euxassay_000772_13
TS23: laryngeal cartilage Moderate Regionally restricted euxassay_000772_13
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_13
TS23: embryo Weak Regionally restricted euxassay_000772_13
TS23: skin Present euxassay_000772_13
Specimen euxassay_000772_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_14
TS23: olfactory epithelium Weak Regionally restricted euxassay_000772_14
TS23: thymus primordium Moderate Uniform euxassay_000772_14
TS23: laryngeal cartilage Weak Regionally restricted euxassay_000772_14
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_14
TS23: embryo Weak Regionally restricted euxassay_000772_14
TS23: skin Present euxassay_000772_14
Specimen euxassay_000772_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_15
TS23: thymus primordium Moderate Uniform euxassay_000772_15
TS23: laryngeal cartilage Weak Regionally restricted euxassay_000772_15
TS23: urethra Weak Regionally restricted euxassay_000772_15 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_15
TS23: embryo Weak Regionally restricted euxassay_000772_15
TS23: skin Present euxassay_000772_15
Specimen euxassay_000772_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_16
TS23: thymus primordium Moderate Uniform euxassay_000772_16
TS23: urethra Weak Regionally restricted euxassay_000772_16 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_16
TS23: embryo Weak Regionally restricted euxassay_000772_16
TS23: skin Present euxassay_000772_16
Specimen euxassay_000772_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_17
TS23: olfactory epithelium Weak Regionally restricted euxassay_000772_17
TS23: thymus primordium Moderate Uniform euxassay_000772_17
TS23: pharynx Weak Regionally restricted euxassay_000772_17
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_17
TS23: embryo Weak Regionally restricted euxassay_000772_17
TS23: skin Present euxassay_000772_17
Specimen euxassay_000772_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_18
TS23: olfactory epithelium Weak Regionally restricted euxassay_000772_18
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_18
TS23: embryo Weak Regionally restricted euxassay_000772_18
TS23: skin Present euxassay_000772_18
Specimen euxassay_000772_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_19
TS23: olfactory epithelium Weak Regionally restricted euxassay_000772_19
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_19
TS23: embryo Weak Regionally restricted euxassay_000772_19
TS23: skin Present euxassay_000772_19
Specimen euxassay_000772_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_20
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_20
TS23: embryo Weak Regionally restricted euxassay_000772_20
TS23: skin Present euxassay_000772_20
Specimen euxassay_000772_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_21
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_21
TS23: embryo Weak Regionally restricted euxassay_000772_21
TS23: skin Present euxassay_000772_21
Specimen euxassay_000772_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_22
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_000772_22
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_22
TS23: embryo Weak Regionally restricted euxassay_000772_22
TS23: skin Present euxassay_000772_22
Specimen euxassay_000772_23: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral epithelium Weak Regionally restricted euxassay_000772_23
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_000772_23
TS23: pharynx epithelium Weak Regionally restricted euxassay_000772_23
TS23: embryo Weak Regionally restricted euxassay_000772_23
TS23: skin Present euxassay_000772_23
Specimen euxassay_000772_24: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Weak Regionally restricted euxassay_000772_24
TS23: embryo Weak Regionally restricted euxassay_000772_24
TS23: skin Present euxassay_000772_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory