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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827080
Gene symbol: Pcdh7
Gene name: protocadherin 7
Probe: T36748
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_009713_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Weak Regionally restricted euxassay_009713_01
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_01
TS23: dorsal root ganglion Weak Regionally restricted euxassay_009713_01
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_01
Specimen euxassay_009713_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Weak Regionally restricted euxassay_009713_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_02
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_02
Specimen euxassay_009713_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Weak Regionally restricted euxassay_009713_03
TS23: trigeminal ganglion Moderate Spotted euxassay_009713_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_03
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_03
Specimen euxassay_009713_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Weak Regionally restricted euxassay_009713_04
TS23: trigeminal ganglion Moderate Spotted euxassay_009713_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_04
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_04
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_04
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_04
Specimen euxassay_009713_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Weak Regionally restricted euxassay_009713_05
TS23: olfactory epithelium Weak Regionally restricted euxassay_009713_05
TS23: trigeminal ganglion Moderate Spotted euxassay_009713_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009713_05
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_05
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_05
Specimen euxassay_009713_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Weak Regionally restricted euxassay_009713_06
TS23: olfactory epithelium Weak Regionally restricted euxassay_009713_06
TS23: trigeminal ganglion Moderate Spotted euxassay_009713_06
TS23: vestibulo-cochlear ganglion Moderate Spotted euxassay_009713_06
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009713_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009713_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_06
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_06
Specimen euxassay_009713_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Spotted euxassay_009713_07
TS23: vestibulo-cochlear ganglion Moderate Spotted euxassay_009713_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009713_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009713_07
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_009713_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009713_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_07
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_009713_07
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_07
Specimen euxassay_009713_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_009713_08
TS23: trigeminal ganglion Moderate Spotted euxassay_009713_08
TS23: vestibulo-cochlear ganglion Moderate Spotted euxassay_009713_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009713_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_08
TS23: olfactory cortex mantle layer Moderate Regionally restricted euxassay_009713_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009713_08
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_009713_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009713_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_08
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_009713_08
Specimen euxassay_009713_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_009713_09
TS23: trigeminal ganglion Moderate Spotted euxassay_009713_09
TS23: vestibulo-cochlear ganglion Moderate Spotted euxassay_009713_09
TS23: olfactory cortex mantle layer Moderate Regionally restricted euxassay_009713_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009713_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009713_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_009713_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009713_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_09
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_009713_09
TS23: dorsal root ganglion Moderate Spotted euxassay_009713_09
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_09
TS23: bladder Weak Regionally restricted euxassay_009713_09
Specimen euxassay_009713_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_009713_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009713_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_10
TS23: olfactory cortex mantle layer Moderate Regionally restricted euxassay_009713_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009713_10
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_009713_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009713_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_10
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_009713_10
TS23: dorsal root ganglion Moderate Spotted euxassay_009713_10
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_10
TS23: bladder Weak Regionally restricted euxassay_009713_10
Specimen euxassay_009713_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_009713_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009713_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_11
TS23: olfactory cortex mantle layer Moderate Regionally restricted euxassay_009713_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009713_11
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_009713_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009713_11
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_009713_11
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_11
TS23: bladder Weak Regionally restricted euxassay_009713_11
Specimen euxassay_009713_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_009713_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_12
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_009713_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009713_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_009713_12
TS23: dorsal root ganglion Moderate Spotted euxassay_009713_12
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_12
TS23: bladder Weak Regionally restricted euxassay_009713_12
Specimen euxassay_009713_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009713_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_13
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_009713_13
TS23: dorsal root ganglion Moderate Spotted euxassay_009713_13
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_13
Specimen euxassay_009713_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009713_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_14
TS23: olfactory cortex mantle layer Moderate Regionally restricted euxassay_009713_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009713_14
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_009713_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009713_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_14
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_009713_14
TS23: dorsal root ganglion Moderate Spotted euxassay_009713_14
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_14
Specimen euxassay_009713_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_009713_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009713_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_15
TS23: olfactory cortex mantle layer Moderate Regionally restricted euxassay_009713_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009713_15
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_009713_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009713_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_15
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_009713_15
TS23: dorsal root ganglion Moderate Spotted euxassay_009713_15
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_15
Specimen euxassay_009713_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_009713_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009713_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_16
TS23: olfactory cortex mantle layer Moderate Regionally restricted euxassay_009713_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009713_16
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_009713_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009713_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_16
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_009713_16
TS23: dorsal root ganglion Moderate Spotted euxassay_009713_16
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_16
Specimen euxassay_009713_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Spotted euxassay_009713_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009713_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009713_17
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_009713_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009713_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_17
TS23: dorsal root ganglion Moderate Spotted euxassay_009713_17
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_17
Specimen euxassay_009713_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Spotted euxassay_009713_18
TS23: vestibulo-cochlear ganglion Moderate Spotted euxassay_009713_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009713_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_18
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_18
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_009713_18
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_009713_18
TS23: dorsal root ganglion Moderate Spotted euxassay_009713_18
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_18
Specimen euxassay_009713_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Spotted euxassay_009713_19
TS23: vestibulo-cochlear ganglion Moderate Spotted euxassay_009713_19
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_19
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009713_19
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_19
TS23: pons mantle layer Moderate Regionally restricted euxassay_009713_19
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_19
Specimen euxassay_009713_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Spotted euxassay_009713_20
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_20
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_20
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_20
Specimen euxassay_009713_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Spotted euxassay_009713_21
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_21
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009713_21
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_21
Specimen euxassay_009713_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Spotted euxassay_009713_22
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_22
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_22
Specimen euxassay_009713_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009713_23
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_23
Specimen euxassay_009713_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_009713_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory