About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4826759
Gene symbol: Npas3
Gene name: neuronal PAS domain protein 3
Probe: T36838
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_009424_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009424_01
Specimen euxassay_009424_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009424_02
Specimen euxassay_009424_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009424_03
Specimen euxassay_009424_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009424_04
Specimen euxassay_009424_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009424_05
Specimen euxassay_009424_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009424_06
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_009424_06
Specimen euxassay_009424_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009424_07
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009424_07
TS23: pons mantle layer Weak Regionally restricted euxassay_009424_07
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_009424_07
TS23: midbrain mantle layer Weak Regionally restricted euxassay_009424_07
Specimen euxassay_009424_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009424_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009424_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_009424_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009424_08
Specimen euxassay_009424_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009424_09
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_009424_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009424_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_009424_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009424_09
Specimen euxassay_009424_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Moderate Regionally restricted euxassay_009424_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009424_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009424_10
Specimen euxassay_009424_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_009424_11
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_009424_11
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_009424_11
Specimen euxassay_009424_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_009424_12
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_009424_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_009424_12
TS23: pons ventricular layer Moderate Regionally restricted euxassay_009424_12
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_009424_12
TS23: ventral grey horn Moderate Single cells euxassay_009424_12
Specimen euxassay_009424_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_009424_13
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_009424_13
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009424_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_009424_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009424_13
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_009424_13
TS23: pons ventricular layer Moderate Regionally restricted euxassay_009424_13
TS23: ventral grey horn Moderate Single cells euxassay_009424_13
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_009424_13
Specimen euxassay_009424_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009424_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009424_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_009424_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009424_14
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_009424_14
TS23: ventral grey horn Moderate Single cells euxassay_009424_14
Specimen euxassay_009424_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009424_15
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009424_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_009424_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_009424_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009424_15
TS23: ventral grey horn Weak Single cells euxassay_009424_15
TS23: medulla oblongata basal plate mantle layer Weak Single cells euxassay_009424_15
Specimen euxassay_009424_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_009424_16
TS23: pons mantle layer Weak Regionally restricted euxassay_009424_16
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_009424_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009424_16
Specimen euxassay_009424_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Weak Regionally restricted euxassay_009424_17
Specimen euxassay_009424_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Weak Regionally restricted euxassay_009424_18
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory