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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825956
Gene symbol: Lmx1a
Gene name: LIM homeobox transcription factor 1 alpha
Probe: T55097
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019601_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: saccule Strong Regionally restricted euxassay_019601_05
Specimen euxassay_019601_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_019601_06
TS23: metencephalon rest of alar plate marginal layer Moderate Regionally restricted euxassay_019601_06
TS23: saccule Strong Regionally restricted euxassay_019601_06
Specimen euxassay_019601_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_019601_07
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_019601_07
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_07
TS23: saccule Strong Regionally restricted euxassay_019601_07
Specimen euxassay_019601_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_019601_08
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_019601_08
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_08
TS23: saccule Moderate Regionally restricted euxassay_019601_08
Specimen euxassay_019601_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Moderate Regionally restricted euxassay_019601_09
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_019601_09
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_09
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019601_09 basal plate
TS23: saccule Moderate Regionally restricted euxassay_019601_09
Specimen euxassay_019601_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Moderate Regionally restricted euxassay_019601_10
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_019601_10
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_10
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019601_10 basal plate
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019601_10 basal plate
Specimen euxassay_019601_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_019601_11
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_019601_11
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_11
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019601_11 basal plate
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019601_11 basal plate
Specimen euxassay_019601_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Moderate Regionally restricted euxassay_019601_12
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_019601_12
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_12
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019601_12 basal plate
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019601_12 basal plate
Specimen euxassay_019601_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_019601_13
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_019601_13
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_13
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019601_13 basal plate
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019601_13 basal plate
Specimen euxassay_019601_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019601_14 basal plate
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019601_14 basal plate
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019601_14 basal plate
Specimen euxassay_019601_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Moderate Regionally restricted euxassay_019601_15
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_019601_15
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_15
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019601_15 basal plate
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019601_15 basal plate
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019601_15 basal plate
Specimen euxassay_019601_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Moderate Regionally restricted euxassay_019601_16
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_019601_16
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_16
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_019601_16 basal plate
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019601_16 basal plate
Specimen euxassay_019601_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_019601_17
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_019601_17
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019601_17 basal plate
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019601_17 basal plate
TS23: saccule Moderate Regionally restricted euxassay_019601_17
Specimen euxassay_019601_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_019601_18
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_019601_18
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_18
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019601_18 basal plate
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019601_18 basal plate
TS23: saccule Moderate Regionally restricted euxassay_019601_18
Specimen euxassay_019601_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_019601_19
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_019601_19
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_19
TS23: saccule Moderate Regionally restricted euxassay_019601_19
Specimen euxassay_019601_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_019601_20
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_019601_20
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_20
TS23: saccule Moderate Regionally restricted euxassay_019601_20
Specimen euxassay_019601_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_019601_21
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_21
TS23: saccule Strong Regionally restricted euxassay_019601_21
Specimen euxassay_019601_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_019601_22
TS23: metencephalon rest of alar plate marginal layer Strong Regionally restricted euxassay_019601_22
TS23: saccule Strong Regionally restricted euxassay_019601_22
Specimen euxassay_019601_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Strong Regionally restricted euxassay_019601_23
TS23: saccule Moderate Regionally restricted euxassay_019601_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/14/2024
MGI 6.23 		The Jackson Laboratory