Hoxa13 RNA in situ Gene Expression Assay

Gene Expression Data
Assay Details

Assay

Reference:	J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type:	RNA in situ
MGI Accession ID:	MGI:4825415
Gene symbol:	Hoxa13
Gene name:	homeobox A13

Probe:	T5309
Probe preparation:	Antisense labelled with digoxigenin RNA
Visualized with:	Alkaline phosphatase
Assay notes:	Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.

Results

euxassay_000981_01 ©

Specimen euxassay_000981_01: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: hand	Moderate	Regionally restricted	euxassay_000981_01

euxassay_000981_03 ©

Specimen euxassay_000981_03: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: hand	Moderate	Regionally restricted	euxassay_000981_03
TS23: foot	Moderate	Regionally restricted	euxassay_000981_03

euxassay_000981_04 ©

Specimen euxassay_000981_04: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: hand	Moderate	Regionally restricted	euxassay_000981_04
TS23: foot	Moderate	Regionally restricted	euxassay_000981_04

euxassay_000981_05 ©

Specimen euxassay_000981_05: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: forelimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_05
TS23: forelimb digit 4 phalanx	Strong	Regionally restricted	euxassay_000981_05
TS23: hindlimb digit 1 phalanx	Strong	Regionally restricted	euxassay_000981_05

euxassay_000981_06 ©

Specimen euxassay_000981_06: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: hindlimb digit 1 phalanx	Strong	Regionally restricted	euxassay_000981_06
TS23: hindlimb digit 2 phalanx	Strong	Regionally restricted	euxassay_000981_06
TS23: hindlimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_06
TS23: forelimb digit 4 phalanx	Strong	Regionally restricted	euxassay_000981_06
TS23: forelimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_06
TS23: forelimb digit 2 phalanx	Strong	Regionally restricted	euxassay_000981_06
TS23: forelimb digit 1 phalanx	Strong	Regionally restricted	euxassay_000981_06

euxassay_000981_07 ©

Specimen euxassay_000981_07: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: forelimb digit 1 phalanx	Strong	Regionally restricted	euxassay_000981_07
TS23: forelimb digit 2 phalanx	Strong	Regionally restricted	euxassay_000981_07
TS23: forelimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_07
TS23: hindlimb digit 1 phalanx	Strong	Regionally restricted	euxassay_000981_07
TS23: hindlimb digit 2 phalanx	Strong	Regionally restricted	euxassay_000981_07
TS23: hindlimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_07
TS23: hindlimb digit 4 phalanx	Strong	Regionally restricted	euxassay_000981_07
TS23: hindlimb digit 5 phalanx	Strong	Regionally restricted	euxassay_000981_07

euxassay_000981_08 ©

Specimen euxassay_000981_08: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: hindlimb digit 5 phalanx	Strong	Regionally restricted	euxassay_000981_08
TS23: hindlimb digit 4 phalanx	Strong	Regionally restricted	euxassay_000981_08
TS23: hindlimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_08
TS23: forelimb digit 2 phalanx	Strong	Regionally restricted	euxassay_000981_08
TS23: forelimb digit 4 phalanx	Strong	Regionally restricted	euxassay_000981_08

euxassay_000981_09 ©

Specimen euxassay_000981_09: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: forelimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_09
TS23: hindlimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_09
TS23: hindlimb digit 4 phalanx	Strong	Regionally restricted	euxassay_000981_09
TS23: hindlimb digit 5 phalanx	Strong	Regionally restricted	euxassay_000981_09

euxassay_000981_12 ©

Specimen euxassay_000981_12: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: genital tubercle	Moderate	Regionally restricted	euxassay_000981_12	Originally this result was annotated to a female-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.

euxassay_000981_13 ©

Specimen euxassay_000981_13: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: glans of male genital tubercle	Moderate	Regionally restricted	euxassay_000981_13
TS23: genital tubercle	Moderate	Regionally restricted	euxassay_000981_13	Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: urethral fold	Moderate	Regionally restricted	euxassay_000981_13	Expression is present in the urethral groove. (Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.)
TS23: bladder fundus	Moderate	Regionally restricted	euxassay_000981_13
TS23: urachus	Moderate	Regionally restricted	euxassay_000981_13

euxassay_000981_14 ©

Specimen euxassay_000981_14: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: spinal cord	Moderate	Regionally restricted	euxassay_000981_14
TS23: tail mesenchyme	Moderate	Regionally restricted	euxassay_000981_14
TS23: glans of male genital tubercle	Moderate	Regionally restricted	euxassay_000981_14
TS23: genital tubercle	Moderate	Regionally restricted	euxassay_000981_14	Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: urethral fold	Moderate	Regionally restricted	euxassay_000981_14	Expression is present in the urethral groove. (Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.)

euxassay_000981_15 ©

Specimen euxassay_000981_15: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: bladder fundus	Moderate	Regionally restricted	euxassay_000981_15
TS23: ureter	Moderate	Regionally restricted	euxassay_000981_15
TS23: genital tubercle of female	Moderate	Regionally restricted	euxassay_000981_15
TS23: glans of male genital tubercle	Moderate	Regionally restricted	euxassay_000981_15
TS23: tail mesenchyme	Moderate	Regionally restricted	euxassay_000981_15
TS23: spinal cord	Moderate	Regionally restricted	euxassay_000981_15

euxassay_000981_17 ©

Specimen euxassay_000981_17: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: hindlimb digit 5 phalanx	Strong	Regionally restricted	euxassay_000981_17
TS23: hindlimb digit 4 phalanx	Strong	Regionally restricted	euxassay_000981_17
TS23: hindlimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_17

Specimen euxassay_000981_18: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: hindlimb digit 5 phalanx	Strong	Regionally restricted	euxassay_000981_18
TS23: hindlimb digit 4 phalanx	Strong	Regionally restricted	euxassay_000981_18
TS23: hindlimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_18
TS23: hindlimb digit 2 phalanx	Strong	Regionally restricted	euxassay_000981_18

Specimen euxassay_000981_19: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: hindlimb digit 4 phalanx	Strong	Regionally restricted	euxassay_000981_19
TS23: hindlimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_19
TS23: hindlimb digit 2 phalanx	Strong	Regionally restricted	euxassay_000981_19
TS23: hindlimb digit 1 phalanx	Strong	Regionally restricted	euxassay_000981_19

Specimen euxassay_000981_20: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: hindlimb digit 5 phalanx	Strong	Regionally restricted	euxassay_000981_20
TS23: hindlimb digit 4 phalanx	Strong	Regionally restricted	euxassay_000981_20
TS23: hindlimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_20
TS23: hindlimb digit 2 phalanx	Strong	Regionally restricted	euxassay_000981_20
TS23: hindlimb digit 1 phalanx	Strong	Regionally restricted	euxassay_000981_20

Specimen euxassay_000981_21: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: hindlimb digit 2 phalanx	Strong	Regionally restricted	euxassay_000981_21
TS23: hindlimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_21
TS23: hindlimb digit 4 phalanx	Strong	Regionally restricted	euxassay_000981_21
TS23: hindlimb digit 5 phalanx	Strong	Regionally restricted	euxassay_000981_21
TS23: forelimb digit 1 phalanx	Strong	Regionally restricted	euxassay_000981_21
TS23: forelimb digit 2 phalanx	Strong	Regionally restricted	euxassay_000981_21

Specimen euxassay_000981_22: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: forelimb digit 2 phalanx	Strong	Regionally restricted	euxassay_000981_22

Specimen euxassay_000981_23: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: forelimb digit 3 phalanx	Strong	Regionally restricted	euxassay_000981_23
TS23: forelimb digit 4 phalanx	Strong	Regionally restricted	euxassay_000981_23
TS23: forelimb digit 5 phalanx	Strong	Regionally restricted	euxassay_000981_23

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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