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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825374
Gene symbol: H1f5
Gene name: H1.5 linker histone, cluster member
Probe: T38513
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_012857_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_03
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_03
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_03
Specimen euxassay_012857_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_04
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_04
Specimen euxassay_012857_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_05
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_05
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_05
Specimen euxassay_012857_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_06
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012857_06
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_012857_06
TS23: pons ventricular layer Weak Regionally restricted euxassay_012857_06
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_06
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_06
Specimen euxassay_012857_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_07
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012857_07
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_012857_07
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_07
Specimen euxassay_012857_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012857_08
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_012857_08
TS23: pons ventricular layer Weak Regionally restricted euxassay_012857_08
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_08
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_08
Specimen euxassay_012857_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012857_09
TS23: pons ventricular layer Weak Regionally restricted euxassay_012857_09
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_09
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_09
Specimen euxassay_012857_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012857_10
TS23: pons ventricular layer Weak Regionally restricted euxassay_012857_10
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_012857_10
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_10
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_10
Specimen euxassay_012857_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_012857_11
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012857_11
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_012857_11
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_012857_11
Specimen euxassay_012857_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_12
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_012857_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012857_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_012857_12
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_012857_12
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_012857_12
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_12
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_12
Specimen euxassay_012857_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012857_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_012857_13
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_012857_13
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_012857_13
TS23: pons ventricular layer Weak Regionally restricted euxassay_012857_13
Specimen euxassay_012857_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012857_14
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_012857_14
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_012857_14
TS23: pons ventricular layer Weak Regionally restricted euxassay_012857_14
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_012857_14
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_14
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_14
Specimen euxassay_012857_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012857_15
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_012857_15
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_012857_15
TS23: pons ventricular layer Weak Regionally restricted euxassay_012857_15
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_012857_15
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_15
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_15
Specimen euxassay_012857_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_012857_16
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_16
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012857_16
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_16
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_16
Specimen euxassay_012857_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_17
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_012857_17
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012857_17
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_17
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_17
Specimen euxassay_012857_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_18
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_18
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_18
Specimen euxassay_012857_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_19
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_19
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_19
Specimen euxassay_012857_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_20
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012857_20
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012857_20
Specimen euxassay_012857_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_21
Specimen euxassay_012857_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_22
Specimen euxassay_012857_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012857_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory