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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825300
Gene symbol: Ifi44l
Gene name: interferon-induced protein 44 like
Probe: IMAGE clone 3215259
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_000516_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_000516_01
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_01
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_01
Specimen euxassay_000516_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_000516_02
TS23: facial ganglion Strong Regionally restricted euxassay_000516_02
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_02
TS23: metencephalon Moderate Uniform euxassay_000516_02
Specimen euxassay_000516_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_000516_03
TS23: facial ganglion Strong Regionally restricted euxassay_000516_03
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_03
TS23: metencephalon Moderate Uniform euxassay_000516_03
Specimen euxassay_000516_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_000516_04
TS23: facial ganglion Strong Regionally restricted euxassay_000516_04
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_04
TS23: metencephalon Moderate Uniform euxassay_000516_04
TS23: midbrain Weak Uniform euxassay_000516_04
Specimen euxassay_000516_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_000516_05
TS23: facial ganglion Strong Regionally restricted euxassay_000516_05
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_000516_05
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_000516_05
TS23: olfactory epithelium Weak Regionally restricted euxassay_000516_05
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_000516_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_05
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_05
TS23: metencephalon Weak Uniform euxassay_000516_05
TS23: medulla oblongata Weak Uniform euxassay_000516_05
TS23: midbrain Weak Uniform euxassay_000516_05
TS23: diencephalon lateral wall mantle layer Weak Uniform euxassay_000516_05
Specimen euxassay_000516_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_000516_06
TS23: trigeminal ganglion Strong Regionally restricted euxassay_000516_06
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_000516_06
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000516_06
TS23: olfactory epithelium Weak Regionally restricted euxassay_000516_06
TS23: sublingual gland primordium Moderate Regionally restricted euxassay_000516_06
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_06
TS23: medulla oblongata Weak Uniform euxassay_000516_06
TS23: metencephalon Weak Uniform euxassay_000516_06
TS23: midbrain Weak Uniform euxassay_000516_06
TS23: diencephalon lateral wall mantle layer Weak Uniform euxassay_000516_06
Specimen euxassay_000516_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Strong Regionally restricted euxassay_000516_07
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000516_07
TS23: olfactory epithelium Weak Regionally restricted euxassay_000516_07
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000516_07
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_07
TS23: medulla oblongata Weak Uniform euxassay_000516_07
TS23: metencephalon Weak Uniform euxassay_000516_07
TS23: midbrain Weak Uniform euxassay_000516_07
TS23: diencephalon lateral wall mantle layer Weak Uniform euxassay_000516_07
TS23: hypothalamus mantle layer Weak Uniform euxassay_000516_07
Specimen euxassay_000516_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000516_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_000516_08
TS23: cervical ganglion Strong Regionally restricted euxassay_000516_08
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000516_08
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_08
TS23: metencephalon Weak Uniform euxassay_000516_08
TS23: medulla oblongata Weak Uniform euxassay_000516_08
TS23: midbrain Weak Uniform euxassay_000516_08
TS23: hypothalamus mantle layer Weak Uniform euxassay_000516_08
TS23: diencephalon lateral wall mantle layer Weak Uniform euxassay_000516_08
Specimen euxassay_000516_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000516_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_000516_09
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_000516_09
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000516_09
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_09
TS23: metencephalon Weak Uniform euxassay_000516_09
TS23: medulla oblongata Weak Uniform euxassay_000516_09
TS23: midbrain Weak Uniform euxassay_000516_09
TS23: hypothalamus mantle layer Weak Uniform euxassay_000516_09
TS23: diencephalon lateral wall mantle layer Weak Uniform euxassay_000516_09
Specimen euxassay_000516_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000516_10
TS23: thoracic ganglion Strong Regionally restricted euxassay_000516_10
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_10
TS23: metencephalon Weak Uniform euxassay_000516_10
TS23: medulla oblongata Weak Uniform euxassay_000516_10
TS23: hypothalamus mantle layer Weak Uniform euxassay_000516_10
TS23: diencephalon lateral wall mantle layer Weak Uniform euxassay_000516_10
Specimen euxassay_000516_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000516_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_000516_11
TS23: thoracic ganglion Strong Regionally restricted euxassay_000516_11
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000516_11
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_11
TS23: metencephalon Weak Uniform euxassay_000516_11
TS23: medulla oblongata Weak Uniform euxassay_000516_11
TS23: midbrain Weak Uniform euxassay_000516_11
TS23: hypothalamus mantle layer Moderate Uniform euxassay_000516_11
TS23: diencephalon lateral wall mantle layer Moderate Uniform euxassay_000516_11
TS23: urethra Strong Regionally restricted euxassay_000516_11 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
Specimen euxassay_000516_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_000516_12
TS23: thoracic ganglion Strong Regionally restricted euxassay_000516_12
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000516_12
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_12
TS23: metencephalon Weak Uniform euxassay_000516_12
TS23: medulla oblongata Weak Uniform euxassay_000516_12
TS23: midbrain Weak Uniform euxassay_000516_12
TS23: hypothalamus mantle layer Moderate Uniform euxassay_000516_12
TS23: diencephalon lateral wall mantle layer Moderate Uniform euxassay_000516_12
Specimen euxassay_000516_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_000516_13
TS23: thoracic ganglion Strong Regionally restricted euxassay_000516_13
TS23: tail mesenchyme Moderate Regionally restricted euxassay_000516_13
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000516_13
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_13
TS23: metencephalon Weak Uniform euxassay_000516_13
TS23: medulla oblongata Weak Uniform euxassay_000516_13
TS23: midbrain Weak Uniform euxassay_000516_13
TS23: hypothalamus mantle layer Moderate Uniform euxassay_000516_13
TS23: diencephalon lateral wall mantle layer Moderate Uniform euxassay_000516_13
Specimen euxassay_000516_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_000516_14
TS23: sublingual gland primordium Moderate Regionally restricted euxassay_000516_14
TS23: thoracic ganglion Strong Regionally restricted euxassay_000516_14
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_000516_14
TS23: tail mesenchyme Weak Regionally restricted euxassay_000516_14
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_14
TS23: metencephalon Weak Uniform euxassay_000516_14
TS23: medulla oblongata Weak Uniform euxassay_000516_14
TS23: midbrain Weak Uniform euxassay_000516_14
TS23: hypothalamus mantle layer Moderate Uniform euxassay_000516_14
TS23: diencephalon lateral wall mantle layer Moderate Uniform euxassay_000516_14
Specimen euxassay_000516_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_000516_15
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_000516_15
TS23: vagus ganglion Strong Regionally restricted euxassay_000516_15
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000516_15
TS23: olfactory epithelium Weak Regionally restricted euxassay_000516_15
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_000516_15
TS23: cervical ganglion Strong Regionally restricted euxassay_000516_15
TS23: tail mesenchyme Moderate Regionally restricted euxassay_000516_15
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_15
TS23: metencephalon Weak Uniform euxassay_000516_15
TS23: medulla oblongata Weak Uniform euxassay_000516_15
TS23: midbrain Weak Uniform euxassay_000516_15
TS23: diencephalon lateral wall mantle layer Moderate Uniform euxassay_000516_15
TS23: urethra Strong Regionally restricted euxassay_000516_15 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
Specimen euxassay_000516_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_000516_16
TS23: trigeminal ganglion Strong Regionally restricted euxassay_000516_16
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_000516_16
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000516_16
TS23: tail mesenchyme Moderate Regionally restricted euxassay_000516_16
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_16
TS23: metencephalon Weak Uniform euxassay_000516_16
TS23: medulla oblongata Weak Uniform euxassay_000516_16
TS23: midbrain Weak Uniform euxassay_000516_16
Specimen euxassay_000516_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_000516_17
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_000516_17
TS23: trigeminal ganglion Strong Regionally restricted euxassay_000516_17
TS23: facial ganglion Strong Regionally restricted euxassay_000516_17
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000516_17
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_17
TS23: metencephalon Weak Uniform euxassay_000516_17
TS23: midbrain Weak Uniform euxassay_000516_17
Specimen euxassay_000516_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_000516_18
TS23: facial ganglion Strong Regionally restricted euxassay_000516_18
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000516_18
TS23: metencephalon Weak Uniform euxassay_000516_18
Specimen euxassay_000516_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_000516_19
TS23: facial ganglion Strong Regionally restricted euxassay_000516_19
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_19
TS23: metencephalon Weak Uniform euxassay_000516_19
TS23: retina Moderate Regionally restricted euxassay_000516_19
Specimen euxassay_000516_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_20
TS23: retina Moderate Regionally restricted euxassay_000516_20
Specimen euxassay_000516_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000516_21
TS23: retina Moderate Regionally restricted euxassay_000516_21
Specimen euxassay_000516_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: retina Moderate Regionally restricted euxassay_000516_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory